Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4096
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916...    32   0.62 
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768...    31   0.82 
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666...    30   1.9  
09_04_0389 + 17239182-17239316,17240246-17240878                       29   4.4  
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784...    29   4.4  
05_07_0220 + 28482589-28483752                                         28   7.7  

>06_01_1113 -
           9164953-9165044,9166453-9166586,9166624-9166734,
           9166815-9167066,9167152-9168186,9168313-9169187,
           9169476-9169673
          Length = 898

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 271 PSTRATPRLPSPSQHPSLRPL--RPQYLPFHPTLPRHRMA 384
           PS R+ PR P+P   PSL+P    PQ +   PT P  + A
Sbjct: 478 PSLRSPPRQPTPPPSPSLQPAFPAPQPVQASPTSPAKQHA 517


>01_01_0975 -
           7686297-7686458,7687117-7687245,7687754-7687831,
           7688011-7688469,7690648-7690788,7691771-7692421
          Length = 539

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 271 PSTRATPRLPSPSQHPSLRPLRPQYL-PFHPTLP 369
           P+T A P  PSP   P L P+ P++L P  P LP
Sbjct: 361 PTTAAAPPPPSPHAQPPLLPVWPRHLAPPPPPLP 394


>11_06_0425 -
           23365108-23366028,23366182-23366340,23366445-23366640,
           23366995-23367527,23367817-23368272,23368507-23368758,
           23368890-23369007,23369836-23369993
          Length = 930

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 554 GHQRSG-MGIGCVRGGVSNRGCMCGISCEWCSMRSVSCNRCGSG 426
           GH +SG  G GC  GG    GC  G++ E      V    CGSG
Sbjct: 817 GHVKSGGCGSGC--GGGCGGGCGGGVAMESSKAGHVKSGGCGSG 858


>09_04_0389 + 17239182-17239316,17240246-17240878
          Length = 255

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 229 RHMLQLLIQPTLRLPSTRATPRLPSPSQHPSLRP-LRPQYLP 351
           RH++++L     R+P   A PR   P++    RP  RP+ +P
Sbjct: 167 RHLVEVLESAKTRVPVLTAAPRRSGPARDELRRPKSRPETIP 208


>05_05_0055 +
           21977546-21978061,21978144-21978162,21978168-21978486,
           21978779-21978799,21980780-21980857,21981116-21981359
          Length = 398

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 268 LPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTLPRHR 378
           LPST  T R PSP + P   P+R +      + PR R
Sbjct: 74  LPSTTTTRRRPSPGRLPRRSPIRARAGSSETSSPRGR 110


>05_07_0220 + 28482589-28483752
          Length = 387

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 262 LRLPSTRATPRLPSPSQHPSLRPLRPQYLP 351
           LRLP  +  P LP P Q P    + P  +P
Sbjct: 165 LRLPKEQTVPALPPPPQSPPAALMNPVAVP 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,669,795
Number of Sequences: 37544
Number of extensions: 212051
Number of successful extensions: 981
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)