Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4096
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   3.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   4.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.4  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 PSTRATPRLPSPSQHPSLRPLRPQYLPFH 357
           PST   PR  SP+ +    PL P++ P H
Sbjct: 154 PST-PFPRFISPNAYRFRPPLNPRFGPTH 181


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 PSTRATPRLPSPSQHPSLRPLRPQYLPFH 357
           PST + PR   P+ +    PL P++ P H
Sbjct: 380 PST-SFPRFIPPNAYRFRPPLNPRFGPMH 407


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -2

Query: 533 GIGCVRGGVSNRGCMCGISCEWCSMRSVSCNRCG 432
           G   +R G ++    CG SC  C       + CG
Sbjct: 24  GYPSIRQGTTSYCLGCGDSCHKCKYGIAMSSACG 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,630
Number of Sequences: 438
Number of extensions: 2206
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)