Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4094
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    26   3.1  
SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|c...    26   3.1  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   3.1  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   7.2  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    24   9.5  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    24   9.5  

>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 295 RPERSQKPKQMEADGTKSHEGPS 227
           RP + QK KQ    G+K+ E P+
Sbjct: 155 RPSKPQKEKQGNKQGSKTEESPN 177


>SPACUNK4.19 |mug153||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 220 VSLMALRGSLYHQLPFASVFGFSQGVCNRVQ*AQLSDPTNSL 345
           V+  A +G    Q    S F F  G+C++V+  +L    NSL
Sbjct: 58  VNKQAEQGKEQQQYAMKSQFQFRSGICSKVRSDELGFKGNSL 99


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 292 PERSQKPKQMEADGTKSHEGPSGTRPSAM 206
           PE  +  K ++ D  +S E P  TRP A+
Sbjct: 420 PEELENMKYLQIDTPESKEYPRSTRPRAL 448


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 133 SADHSMLLCHPMTFCPWRFL*PRLLPVSVFTRSDQRVDE 17
           S+ HS +   P    PW      L+   V TR  + VDE
Sbjct: 447 SSRHSGIFATPTFLSPWNIKNIPLVTPEVSTRQTKNVDE 485


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 297 LQQSPMSAVI*SDQQFGGRPAGLFPSTLPCHNQSFKVVWW 416
           LQ  P      + ++F G P  L P TL    Q   V WW
Sbjct: 816 LQSVPFFRQPDAPKRFVGTPDYLAPETLRGSTQDDMVDWW 855


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 281 PKTEANGS*WYKEPRRAIRDTXFS 210
           P TE   + WY+ P   +RD+ +S
Sbjct: 196 PYTEYVSTRWYRAPELLLRDSYYS 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,560
Number of Sequences: 5004
Number of extensions: 34446
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)