Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4094
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0921 + 7753744-7753821,7753921-7754856,7755285-7755377,775... 32 0.25
12_02_1057 + 25733376-25735439 31 0.33
08_02_1461 - 27299891-27301870 31 0.33
06_03_0819 - 24977204-24977290,24977372-24977746,24977823-249781... 30 0.76
12_02_1060 - 25752181-25754229 29 1.7
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 2.3
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 29 2.3
01_07_0210 + 42010460-42010553,42010660-42010851,42011353-42011678 29 2.3
12_02_1051 + 25696499-25696888 28 4.0
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979... 28 4.0
06_01_1019 - 7971606-7972077,7972550-7972752 27 5.3
06_01_0755 + 5648872-5649471,5650092-5650453,5650576-5650619,565... 27 7.1
01_06_0593 - 30468654-30469109 27 7.1
01_01_0153 - 1352982-1353731 27 7.1
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172... 27 9.3
02_05_0223 - 26943210-26944623,26944741-26945666 27 9.3
>07_01_0921 +
7753744-7753821,7753921-7754856,7755285-7755377,
7755462-7755815
Length = 486
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 433 YIYIGGHQTTLKD*--LWQGKVEGKRPAGRPPNCWSDQITALIGLCCKRPERSQKPKQME 260
++ +G TL+D LW + G+ G+ W D I L+G+ + QK ++ E
Sbjct: 86 HLPVGEMTITLQDVSCLWGLPIHGRPITGQADGSWVDMIERLLGIPMEEQHMKQKKRKKE 145
Query: 259 ADGT 248
D T
Sbjct: 146 DDMT 149
>12_02_1057 + 25733376-25735439
Length = 687
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 316 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 194
++GL C P+RS +P +A G E P + P+ M +T
Sbjct: 607 VVGLWCAHPDRSLRPTIRQAVGVLRGEAPPPSLPARMPVAT 647
>08_02_1461 - 27299891-27301870
Length = 659
Score = 31.5 bits (68), Expect = 0.33
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +3
Query: 39 LVKTLTGNNRGYKNRQGQKVMGWHXSIE*SALQARHDLRKRPTQKKRLFFFLVEYFIAEG 218
LV +TG Y GWH +++ AL + DL R F + +F G
Sbjct: 311 LVSRMTGARYPYLWMSAAHEQGWHVALDACALGTK-DLDTLGLSLLRPDFIVCNFFKVFG 369
Query: 219 RVPDGPSWLFVPSASI 266
P G + LFV +S+
Sbjct: 370 ENPSGFAGLFVKKSSL 385
>06_03_0819 -
24977204-24977290,24977372-24977746,24977823-24978199,
24978456-24978770,24978861-24979296,24979386-24979463
Length = 555
Score = 30.3 bits (65), Expect = 0.76
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -1
Query: 433 YIYIGGHQTTLKD*--LWQGKVEGKRPAGRPPNCWSDQITALIGLCCKRPERSQKPKQME 260
++ IG TL+D LW + GK G+ WSD I +G+ + E +K ++ E
Sbjct: 86 HLPIGEMTITLQDISCLWGLPISGKLIVGQYDGNWSDMIERYLGIPPEDQEMKKKKRKKE 145
Query: 259 AD 254
D
Sbjct: 146 DD 147
>12_02_1060 - 25752181-25754229
Length = 682
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 316 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 194
++GL C P+RS +P +A E P + P+ M +T
Sbjct: 605 IVGLWCAHPDRSVRPVIRQAVSVLRGEAPPPSLPARMPVAT 645
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 316 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 194
++GL C P+RS +P +A E P + P+ M +T
Sbjct: 705 VVGLWCAHPDRSVRPVIRQAISVLRGEAPPPSLPARMPVAT 745
>08_01_0345 +
3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +3
Query: 15 RSSTRWSDLVKTLTGNNRGYKNRQGQKVMGWHXSIE*SALQARHDLRKRPTQKKRLFFFL 194
+S R++D V+ N G N S+E + Q + D+R R + R+ FL
Sbjct: 602 KSEERFTDQVREEQDNGSGTSNEPSSTAHEQEKSLELNPNQPKQDIRNRASAFYRM--FL 659
Query: 195 VEYFIAEGRVPDGPSWLFVPSAS-ICFGFWLLS 290
+ + G++ G + + S F F++++
Sbjct: 660 GTFMLEPGKILLGSTAAAISGVSKPIFAFYIMT 692
>01_07_0210 + 42010460-42010553,42010660-42010851,42011353-42011678
Length = 203
Score = 28.7 bits (61), Expect = 2.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 352 RPPNCWSDQITALI 311
RPPNCW+D+ A++
Sbjct: 107 RPPNCWADRAAAIV 120
>12_02_1051 + 25696499-25696888
Length = 129
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 316 LIGLCCKRPERSQKPKQMEADGTKSHEGPSGTRPSAMKYST 194
++GL C P+RS +P +A E P + P+ M +T
Sbjct: 51 VVGLWCAHPDRSLRPTIRQAVSVLRGEVPPPSLPTRMPVAT 91
>02_05_0339 -
28094581-28094817,28095011-28096381,28097713-28097922,
28098047-28098283,28098677-28099041,28099661-28099970
Length = 909
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 391 LWQGKVEGKRPAGRPPNCWSDQITALIGLCCKRPERSQKPKQMEAD 254
LW ++G+ G+ W D+I L+G+ + QK ++ + D
Sbjct: 450 LWGLPIQGEPIIGKLEGPWVDEIETLLGVTPGKQVMKQKKRKADGD 495
>06_01_1019 - 7971606-7972077,7972550-7972752
Length = 224
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 439 YIYIYIGGHQTTLKD*LWQGKVEGK 365
Y+ ++GG Q + D W+ KVE K
Sbjct: 154 YMIQFVGGVQDNMSDFFWKAKVENK 178
>06_01_0755 +
5648872-5649471,5650092-5650453,5650576-5650619,
5651324-5651538,5651643-5651767,5651862-5651931
Length = 471
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 162 PTQKKRLFFFLVEYFIAEGRVPDGPSWLFVPSASICFGFWLLSGRLQQSPMS 317
P ++ F ++E ++ GR+ GP W V + F L G +Q P+S
Sbjct: 4 PARRSTRFCLVIEEVVSPGRLGRGPPWAAV-GLRLKKVFKLELGSIQAEPIS 54
>01_06_0593 - 30468654-30469109
Length = 151
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 295 RPERSQKPKQMEADGTKSHEGPSGTR 218
+PE P+ E DG HE P G R
Sbjct: 46 QPEERDSPEIHEKDGDCGHEDPGGVR 71
>01_01_0153 - 1352982-1353731
Length = 249
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -1
Query: 349 PPNC-WSDQITALIGLC--CKRPERSQKPKQMEADGTKSHEGP 230
PP C D++ C C+R E S+ P+ + D H GP
Sbjct: 199 PPTCRCMDEVKECADACKDCQRVESSEPPRYVCKDRFTGHPGP 241
>08_01_0216 -
1717696-1718265,1718856-1720082,1720558-1720627,
1721579-1721602,1722073-1722140
Length = 652
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 391 LWQGKVEGKRPAGRPPNCWSDQITAL 314
LW G G RP P+ W D ++ L
Sbjct: 209 LWNGISTGARPRHSSPDWWYDDVSCL 234
>02_05_0223 - 26943210-26944623,26944741-26945666
Length = 779
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 316 AQLSDPTNSLVAGRRVFSLLPCPATINLSRLSGGRRYIYIY 438
+Q+ D LVAG V +L I LS L GR Y Y Y
Sbjct: 438 SQIGDK-GGLVAGDPVKDVLLGKVRIRLSTLETGRTYAYAY 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,246
Number of Sequences: 37544
Number of extensions: 256350
Number of successful extensions: 767
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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