Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4091
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73911-3|CAC42339.1|  324|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein...    28   8.8  

>Z73911-3|CAC42339.1|  324|Caenorhabditis elegans Hypothetical
           protein T12A7.7 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 16  FRTNRVVRFRNLGLFITLNVNNAMNVNFIVINTPSHFVEK 135
           FRTN V+ F  LGLFI      A     IV+N P     K
Sbjct: 259 FRTNNVI-FLTLGLFIWALHGAACTAGIIVVNKPFRLATK 297


>AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein 2
           protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 752 GPHQMHKPGRHYQSPNYP 699
           GPH  H+  R Y SPN P
Sbjct: 69  GPHLFHRQKRQYSSPNPP 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,394,438
Number of Sequences: 27780
Number of extensions: 384272
Number of successful extensions: 788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)