Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4086
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 30 0.15
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 26 3.3
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 3.3
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe... 25 4.4
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 4.4
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 25 4.4
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.7
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 25 7.7
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 7.7
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 7.7
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 30.3 bits (65), Expect = 0.15
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 77 YMMGLITGLIKRLLKLALYIAVFAIAVVLIPNIPPYTKFSSIKLEPTKPRTGILESN-GL 253
Y G I G I + L A+ + A P++ P K+EP + GIL N G
Sbjct: 575 YERGFI-GDIYQFLYNAVNVGSVAFDATFFPSLLPKKTMDGSKIEPPESSKGILNVNLGC 633
Query: 254 LNNAEQL 274
+NN +L
Sbjct: 634 VNNLTEL 640
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = -3
Query: 305 MLLVPAISLYIVVQHYLEAH---SIP-IYLF*ALWV 210
+LL+PA+ I + Y+E H SIP I++F L+V
Sbjct: 64 LLLIPALFTLIWIYKYIEPHSLISIPGIFVFLGLYV 99
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 225 EQVYWNRMGF*IMLNNYIK-GNCW 293
E++Y N+ GF I NNY + NC+
Sbjct: 304 EKIYMNKDGFYITFNNYREASNCY 327
>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 458 PNLKVFRRYVH-KQVHCKV 405
PN+KV R Y+H +QV C +
Sbjct: 134 PNMKVLRDYLHWRQVDCHI 152
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 386 FVTQIGPPCSGLAYEHICGR 445
FV Q+ PP ++ H CGR
Sbjct: 330 FVLQLDPPLDPKSFSHRCGR 349
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 322 GIGY*FNHRRNWETHSWRAWYFCNPNW 402
G+ F+ ++NWE + +W FC W
Sbjct: 84 GLDKKFDGKKNWEYRTANSW-FCKMKW 109
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 306 NASGPSNFPLYSCSALFRSPFDSNIPVLGFVGS 208
N+S +N LY+ SP SN+P+ F+ S
Sbjct: 148 NSSSDTNSILYAGPTFTHSPAASNLPIPTFLHS 180
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 24.6 bits (51), Expect = 7.7
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 185 TKFSSIKLEPTKPRTGILESNGLLNNAEQLYKGKLLGPEAFQTF----NGELDTSLTTGE 352
TKFS+ L K I + ++ EQL K GP+A F + +TS TGE
Sbjct: 729 TKFSTDSLHIAKRAAKIESAAAPMDPMEQLEMEKSEGPKALAGFVLSKSNPQETSKITGE 788
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 89 LITGLIKRLLKLALYIAVFAIAVVL 163
LI IKRL +LAL AIA+V+
Sbjct: 342 LIASFIKRLARLALTAPPGAIAIVI 366
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 140 VFAIAVVLIPNIPPYTKFSSIKLEP 214
V IA ++P + PY SS+KL P
Sbjct: 941 VSPIAGRMVPRLQPYAVSSSLKLTP 965
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,992
Number of Sequences: 5004
Number of extensions: 46853
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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