Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4086
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 30 0.82
10_08_0739 + 20217842-20218852 29 1.4
02_05_1021 + 33565866-33567431,33568317-33568604 29 1.4
12_02_1058 - 25735902-25736000,25736085-25736152,25736575-257366... 29 2.5
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877 28 3.3
01_01_1218 + 9846644-9847837 28 3.3
11_06_0614 - 25530782-25531018,25532053-25532235 28 4.4
07_01_1106 - 10187609-10190041,10190292-10191932 27 5.8
06_01_0372 + 2684208-2684390,2684867-2684968,2685197-2685290,268... 27 7.6
03_05_1064 - 30058253-30058467,30058549-30058762,30058846-300589... 27 7.6
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 30.3 bits (65), Expect = 0.82
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -2
Query: 252 SPFDSNIPVLGFVGSNLMLENLVYGGMFGISTTAIAKTAMYNANFSSLFINPVISPIMYF 73
SP+ N+ V+ +G N + E + + + + T + A + + FSSL NP SP+ F
Sbjct: 105 SPYSWNL-VVDLLGKNRLFEPM-WDTVSSMRTQGLLSLATFASVFSSLAANPASSPLRAF 162
>10_08_0739 + 20217842-20218852
Length = 336
Score = 29.5 bits (63), Expect = 1.4
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Frame = -2
Query: 408 GGPIWVTKVPCPPAVSFPISPVVKLVSNSPLKVWNASGPSNFPLYSCSALFRSPFDSNIP 229
G P + + CP VSFP+ P S + W+A PS P + A+ + F +N P
Sbjct: 35 GLPAFAAGIHCPHRVSFPL-PTAPSASLLLMPSWSAH-PS-LPYLALKAV--TSFPANSP 89
Query: 228 VLGFVGSNLMLENLVYG---GMFGISTTAIAKTAMYNANFSSLFINPVISP 85
L V + + L + G S + +TA +A +SL +P P
Sbjct: 90 RLPSVHAAVSLFDSASGVPLASLDGSALTLLRTAAVSALAASLLASPTRPP 140
>02_05_1021 + 33565866-33567431,33568317-33568604
Length = 617
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 408 GGPIWVTKVPCPPAVSFPISPVVKL 334
GGP WV +V P VS P+ P ++L
Sbjct: 106 GGPRWVLEVGPGPRVSAPVGPALQL 130
>12_02_1058 -
25735902-25736000,25736085-25736152,25736575-25736638,
25736838-25736919,25737503-25737561,25737664-25737723,
25737884-25738046,25738236-25738360,25738827-25738859,
25739098-25739160,25739364-25739423,25739972-25740196,
25740272-25740433
Length = 420
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 179 PYTKFSSIKLEPTKPRTGILESNGLLNNAEQLYKGKLLGPEAFQ 310
P + S +E + IL+++ E++Y+G+L+GP F+
Sbjct: 241 PQWRASGYDVESSASSDAILKASAAREAIEKVYQGQLVGPSTFE 284
>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
Length = 446
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 314 KFGMLLVPAISLYIVVQHYLEAHSIPI 234
K G+LL P+++ Y++ Q +L+ S+PI
Sbjct: 311 KIGLLL-PSVNFYLIAQRFLKELSLPI 336
>01_01_1218 + 9846644-9847837
Length = 397
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 360 FPISPVVKLVSNSPLKVWNASGPSNFPLYSCSALFRSPFDSNIPVL 223
FP ++ L L+ WN + +FP S + R P +N+P L
Sbjct: 299 FPSLEILNLWEMYSLQFWNGTNNGDFPRLSHLCISRCPKLTNLPPL 344
>11_06_0614 - 25530782-25531018,25532053-25532235
Length = 139
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 25 PNQSPEVFLRQKSLNSEVHDGANNRINKKAAK 120
PN + ++ +K LN+ VH+G + R NKK K
Sbjct: 16 PN-ADDILDLEKGLNAHVHEGTSMRKNKKKKK 46
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 369 AVSFPISPVVKLVSNSPLKVWNASGPSNFPLYSCSALFRSPFDSNIPVL 223
A FP ++ L L+ WN + +FP ++ R P SN+P L
Sbjct: 1213 APGFPSLEILNLWEMYSLQFWNGTRYGDFPQLRGLSISRCPKLSNLPPL 1261
>06_01_0372 +
2684208-2684390,2684867-2684968,2685197-2685290,
2685450-2685532,2685684-2685773,2686931-2687173
Length = 264
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 164 IPNIPPYTKFSSIKLEPTKPRTGIL 238
IP+I + SS K PTKP T +L
Sbjct: 232 IPDITEHASLSSHKTTPTKPMTNML 256
>03_05_1064 -
30058253-30058467,30058549-30058762,30058846-30058936,
30059361-30059617,30059702-30059902,30059975-30060065,
30060510-30060573,30060754-30061021,30061118-30061249
Length = 510
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 315 KVWNASGPSNFPLYSCSALFRSPFDSNIPVLGFVG 211
K+ NAS S SC+ F PF S +P +G G
Sbjct: 94 KLENASEDSLLGQASCTTTFAVPFSSAMPAMGSDG 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,770,537
Number of Sequences: 37544
Number of extensions: 291109
Number of successful extensions: 827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -