Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4085
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0083 - 667530-667837,668092-668224 32 0.44
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 31 0.58
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 31 0.77
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 31 0.77
12_01_0632 + 5239070-5239336 29 3.1
06_03_1377 - 29692895-29692899,29700435-29702190 29 3.1
01_06_1010 + 33802947-33803473,33804096-33804273 29 4.1
01_05_0118 + 18335065-18335553 29 4.1
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 28 5.4
11_03_0047 - 9311913-9312659 28 5.4
06_03_1126 + 27805982-27806475,27806617-27807202 28 5.4
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137... 28 5.4
02_05_0513 - 29682657-29682956 28 5.4
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 28 5.4
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 28 7.2
09_02_0468 - 9608922-9610061 27 9.5
09_02_0414 - 8825575-8826654,8826737-8827144 27 9.5
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 27 9.5
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 27 9.5
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 27 9.5
>03_01_0083 - 667530-667837,668092-668224
Length = 146
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 263 SSRRYSSSQPTTGSSTLGVTHLRRGSSASHGLRTTRTQHSSSVSTHHRLRA 415
S + S+ P+TG GV+ +R G+ HG T+ S STHH + A
Sbjct: 11 SRSSFLSAHPSTGVHQ-GVSRIR-GTHVEHGTTTSADDEYGSASTHHGMPA 59
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 185 PASQPQQDHRSRLTALPGPTARNFTASSRRYSSSQPTTGSST 310
PA QP Q + ++ + PT+ + ++S R SS+P +ST
Sbjct: 143 PAPQPVQPQQQLVSPVAAPTSSSSSSSDRSSGSSKPARATST 184
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +2
Query: 263 SSRRYSSSQPTTGSSTLGVTHLRRGSSASHGLRTTRTQHSS 385
S R Y SS + SS G + S S G RTTRT+HSS
Sbjct: 252 SKRSYRSSSDDSDSSKTGGSS---SDSESEGRRTTRTKHSS 289
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 193 AASTGPSQPTHRASWSYGTQLHCLITSLQFIAAHDRIINAWGHTSPAWQ 339
A+STG +P +W+ G++ L +L F AA+ ++ + + WQ
Sbjct: 26 ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74
>12_01_0632 + 5239070-5239336
Length = 88
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 233 PGPTARNFTASSRRYSSSQPTTGSSTLGVTHLRRGSSASHGLRTT 367
PG +F++SS R S++ T + G RRGS G+RTT
Sbjct: 6 PGVARASFSSSSGRLSAAGSTASGGSGGGWE-RRGSPTRSGVRTT 49
>06_03_1377 - 29692895-29692899,29700435-29702190
Length = 586
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 289 AHDRIINAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 462
+H+R+ + A ++ T H H +S D S++ H A SS+ST C
Sbjct: 439 SHERLTISHEKLKEAHDNLLSTTQHGAHIDVGISCDLLDDSATCHIAHVASSSISTSC 496
>01_06_1010 + 33802947-33803473,33804096-33804273
Length = 234
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +2
Query: 245 ARNFTASSRRYSSSQPTTGSSTLGVTHLRRGSSASHGLRTTRTQHSSSVSTHHRLRAALA 424
A+ S+ R SS P++ + R SSAS LR S+S S H R+ +
Sbjct: 84 AKKEVPSAPRVSSRWPSSLPRAVSAGAAGRTSSASSKLREASASASASFSFSHWSRSQAS 143
Query: 425 TITQHSA 445
+ H A
Sbjct: 144 RVRPHGA 150
>01_05_0118 + 18335065-18335553
Length = 162
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +3
Query: 297 PDHQRLGSHISG-VAALHHMDYARHA--RNIQAQSRLTTDFEQHWRQSRSIQLSFD 455
P +G I G +A+ H +Y A ++ + +SRL+T +W++ RS+ L D
Sbjct: 107 PPRAEIGHTIQGKLASTHTSEYLTPAGTQDDRRRSRLSTTLVGNWKEERSVGLRQD 162
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 289 AHDRIINAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 462
+H+R+ + A ++ T H H +S D S+ H A SS+ST C
Sbjct: 372 SHERLTISHEKLKEAHDNLLSTTQHGAHIDAGISCDLLDDSAICHVAHVALSSISTSC 429
>11_03_0047 - 9311913-9312659
Length = 248
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 212 RSRLTALPGPTARNFTASSRRYSSSQPTTGSSTLGVTH 325
R ++ P P T+SS S S PTTGS G+ H
Sbjct: 44 RELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDH 81
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +2
Query: 248 RNFTASSRRYSSSQPTTGSSTLGVTHLRRGSSASHGL--------RTTRTQHSSSVSTH 400
R SRRY SS P+T S+ S+A++ RT T HSS+ S+H
Sbjct: 165 RPIAIPSRRYDSSPPSTASTRCDYQSSFTCSTAAYPASRCYYYAGRTAATNHSSAASSH 223
>03_03_0132 +
14711645-14711839,14712641-14712970,14713689-14713751,
14713833-14713906,14714004-14714099,14714705-14714759,
14714867-14714971,14715054-14715135,14715450-14715562,
14715717-14716118
Length = 504
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 136 RIHADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQ 252
+ H+DKS T+ PQ A A P PT A W Q
Sbjct: 371 KAHSDKSRDYTI-PQGAMQAVPQPPGVPTTSAGWQGNPQ 408
>02_05_0513 - 29682657-29682956
Length = 99
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -2
Query: 327 RCVTPSVDDPVVGCDEL*RRDEAVKLRAVGPGSAVSRLRWS 205
RC T +DPV G + RRD +K RA+ P +LRWS
Sbjct: 44 RCGTRVAEDPVGGEACIGRRDGWIKGRALLPEKI--KLRWS 82
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = +2
Query: 167 QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRYSSSQPTTGSSTLGVTHLRRGSSA 346
QS + +S P Q + S +ALP T N T+ + S P+T L R +
Sbjct: 879 QSFSNVVSSLPSQPYASA-SALPAQTRTNMTSLPQSMISVNPSTQHVAPMNNLLSRATVH 937
Query: 347 SHGLRTTRTQHSSSVSTHHR 406
H T +V+ HH+
Sbjct: 938 QHTQSYALTSDPVAVAVHHQ 957
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 346 ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 462
++ T H H +S D S+S H A SS+ST C
Sbjct: 282 LSTTQHGAHIDVGISCDLLDDSASCHIPHVASSSISTSC 320
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 213 AADSPRFLVLRHATSLPHHVATVHRSPRPDHQR 311
+ DSPR+ R S+P T+ RSPR +R
Sbjct: 77 SVDSPRWRGARRRPSVPDMELTLSRSPRAGEER 109
>09_02_0414 - 8825575-8826654,8826737-8827144
Length = 495
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 121 GYHKPRIHADKSTSLTVVPQQASIAASTGPSQPTHRAS 234
G H P ++DK T V P++ S + P P H S
Sbjct: 2 GPHPPSSYSDKKTCQNVPPEKPSSTSFCHPQFPQHLLS 39
>07_01_1149 + 10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 250 ACRRTRKRGESAAMVLLRLRCWLAVGRLSM 161
+C + RKRG S+ ++L++R A GR+S+
Sbjct: 975 SCNKWRKRGISSVPLILKVRVRPAPGRVSV 1004
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 423 RQSRSIQLSFDSLQTSSSTGDTHAAF--KLSLDSPQTSSSTGPCKLI 557
R+SR+ +L D + S D ++ LD P SS PC++I
Sbjct: 258 RRSRAAELDVDLVLERRSMKDDKRLLSCRVKLDEPPPSSQPSPCRVI 304
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 179 SKPASQPQQDHRSRLTALPGPTARNFTASSRRYSSSQPTTGSSTL 313
S SQPQQ H ++P PT +A +S P S +
Sbjct: 393 SSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNSASQWPKVTQSDI 437
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,515,860
Number of Sequences: 37544
Number of extensions: 396031
Number of successful extensions: 1463
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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