Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4085
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.47 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.62 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   0.82 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 233 PGPTARNFTASSRRYSSSQPTTGSSTLGVTHLRRGSSAS 349
           P P  R  +A S   SSS P  G++  G    R G   +
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETN 549


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 305 STLGVTHLRRGSSASHGLRTTRTQHSSSVSTHHRLRAALA 424
           ST G  H   G   SH   T    HS + + HH+    LA
Sbjct: 410 STPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLA 449


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 264 HHVATVHRSPRPDHQRLGSHISGVA 338
           HH   VHR  +P++  L S   G A
Sbjct: 26  HHNGVVHRDLKPENLLLASKAKGAA 50


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 168 CQ*RAFICVNAGFVVAEVLDALMMNQKVACSHHVGVTSLGRLKR 37
           C+ RA++   + +V    + A  M + +A  H + V ++  LKR
Sbjct: 114 CKIRAYVSEMSSYVSVLTIVAFSMERYLAICHPLRVYTISGLKR 157


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -2

Query: 636 LTIGRIGYRAPPRVXXXXX*LALSVLRLACKGQCCSKSAVS 514
           +  G +G  + P +      + +++LR++  G C + S  S
Sbjct: 81  IVAGAVGVFSSPTILISYIYILMAILRMSADGGCRNFSTCS 121


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 381 QAQSRLTTDFEQHWRQSRSIQLSFDSLQTSSSTGDTHAAFKLSLDSPQTSSSTGPCKLIS 560
           Q Q +     +Q  +QS S  L   +   SS    + AA   +  SP+ +SST    ++S
Sbjct: 796 QQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLS 855


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/62 (20%), Positives = 24/62 (38%)
 Frame = +2

Query: 167  QSSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRYSSSQPTTGSSTLGVTHLRRGSSA 346
            Q    +   QPQQ  +      P P  +      ++    Q   G+ +  V  L+RG ++
Sbjct: 1507 QQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNS 1566

Query: 347  SH 352
             +
Sbjct: 1567 GN 1568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,670
Number of Sequences: 438
Number of extensions: 3779
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)