Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4083
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0087 + 5553730-5553842,5555221-5555353,5555887-5556023,555...    27   6.6  
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    27   8.7  

>03_02_0087 +
           5553730-5553842,5555221-5555353,5555887-5556023,
           5556254-5556311,5556403-5556642
          Length = 226

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 308 VIVEVKSGTVDIPEKLKFCFVFIAAAKLKVPWYYYVVTEAVDKYIL 171
           V + V + T D P    FCF+ +AAA L+  W + +    VD Y L
Sbjct: 20  VALAVMASTNDFPSVTSFCFL-VAAAILQCLWSFSLA--IVDIYAL 62


>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
            525209-525401,525978-526330,526693-526791,526864-526935,
            527062-527213,527338-527386,527755-527885,528067-528307,
            528392-528565,528656-528797,529236-529282,529370-529450,
            530170-530271,530345-530440,531437-531444,531575-531616,
            531830-531894,534761-534853,534888-534959,535303-535509,
            536318-537226,537503-538158
          Length = 1429

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 174  DIFIYCFSNNIIIPGNLQLSSSNEDKTKF 260
            D+F+   ++  I+P N  ++ + +DK+KF
Sbjct: 962  DVFVLLSNSKPIVPENTNVNLNEDDKSKF 990


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,187,831
Number of Sequences: 37544
Number of extensions: 176988
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)