Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4083
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF047660-9|AAC04433.3|  339|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 248 VFIAAAKLKVPWYYYVVTEAVDKYILRHEIEVSN 147
           VF+A  K+K  W+ Y +TE    ++    IE  N
Sbjct: 240 VFVAGPKVKKNWFIYNITERYVYFVKISPIEEDN 273


>AF047660-9|AAC04433.3|  339|Caenorhabditis elegans Hypothetical
           protein T09A12.1 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 192 FSNNIIIPGNLQLSSSNEDKTKF 260
           F  N+ IPG L++ + +E+K+KF
Sbjct: 270 FIRNVSIPGQLRMFAVDENKSKF 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,761,222
Number of Sequences: 27780
Number of extensions: 159454
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)