Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4083
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   1.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.9  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 80  LTVSPSKRLITAATLKY 30
           LTV+PSKR+  +  LK+
Sbjct: 151 LTVNPSKRITASEALKH 167


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 247 TKQNFSFSGISTVPLLTSTITTRQK*ARLSYIFPK 351
           T  +F  +   T+P L ST+T   K    S +F K
Sbjct: 663 TPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAK 697


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 209 YYVVTEAVDKYILRHEIEVSN 147
           YY  +  +D+  L+H I+V++
Sbjct: 393 YYFESNKIDETTLKHLIDVAS 413


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 338 IFSPKLYLI 364
           +FSPKLY+I
Sbjct: 897 LFSPKLYII 905


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 209 YYVVTEAVDKYILRHEIEVSN 147
           YY  +  +D+  L+H I+V++
Sbjct: 393 YYFESNKIDETTLKHLIDVAS 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,050
Number of Sequences: 438
Number of extensions: 2058
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)