Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4082
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 54 8e-09
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 44 9e-06
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 44 9e-06
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 42 4e-05
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 41 6e-05
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 41 8e-05
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 27 1.1
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 1.5
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 1.9
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 2.6
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 26 2.6
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 3.4
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 4.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.5
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 4.5
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 5.9
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 54.0 bits (124), Expect = 8e-09
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +1
Query: 67 VIEAEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLGVGDALTTMAANST 246
+I A L L LD E LTPLG +A P+EP+L K+++ LG + + ++ A
Sbjct: 900 MIAALQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIA-ML 958
Query: 247 TFPEIFVL-EGRRRLSMHQRALGGDRASDHVAMLNAFQMWE 366
+ P I+ +++ + QRA + SDH+ +LN + W+
Sbjct: 959 SVPNIWSRPREKQQEADRQRAQFANPESDHLTLLNVYTTWK 999
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 44.0 bits (99), Expect = 9e-06
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +1
Query: 61 DAVIE-AEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLG-VGDALTTMA 234
DA ++ A L ++G L + LT LG L LPI+ +LGK++V G + G + ALT A
Sbjct: 996 DATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLEPALTITA 1055
Query: 235 ANSTTFPEIFVLEGRRRLSMHQRALG 312
ST P + E R S + G
Sbjct: 1056 ILSTKSPFLGDDEAREIRSKQSQGWG 1081
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 44.0 bits (99), Expect = 9e-06
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 67 VIEAEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLGVGDALTTMAANST 246
+I A L ++G L + LT LG L++LP++ LGK++VLG DA +++ A T
Sbjct: 1084 IIRALEKLHQVGALSENEKLTKLGKFLSQLPVDANLGKILVLGCFYKCVDAASSIVAMLT 1143
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 41.9 bits (94), Expect = 4e-05
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = +1
Query: 61 DAVIEAEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLGVGDALTTMAAN 240
+ ++ A L L CLD LTPLG ++ P++P L M++ + + ++ A
Sbjct: 471 ETMMRALEELNYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTA- 529
Query: 241 STTFPEIFVL-EGRRRLSMHQRALGGDRASDHVAMLNAFQMWE 366
+ P +FV R+L+ R DH+ +LN + ++
Sbjct: 530 LLSVPNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYHAYK 572
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 41.1 bits (92), Expect = 6e-05
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +1
Query: 40 PGSPRRWDAVIEAEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLG 195
P SP R + ++ LL LG +D+E LT LG ++ P+ PR KM+++G
Sbjct: 841 PTSPGR-SRLEKSLKLLSNLGAIDSEGVLTKLGEQMSLFPLSPRFSKMLIIG 891
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 40.7 bits (91), Expect = 8e-05
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 97 LGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLGVGDALTTMAANSTTFPEIFVL-E 273
LG LD LT LG ++ P++P L K++++ + + T+ + + P +F +
Sbjct: 890 LGALDNFGKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITIVS-MLSVPSVFYRPK 948
Query: 274 GRRRLSMHQRALGGDRASDHVAMLNAFQMWER 369
R S R SDH+ +LN +Q W+R
Sbjct: 949 ERAEESDAAREKFNVPESDHLMLLNIYQHWQR 980
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 187 VLGFVLGVGDALTTMAANSTTFPEIFVLEG 276
VLGF +G+G + T N T+P + + G
Sbjct: 1132 VLGFNVGIGGGMGTTHNNKKTYPRLATVVG 1161
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 166 PRLGKMMVLGFVLGVGDALTTMAANSTTFPE 258
P L K++ F +G+GD + A ST PE
Sbjct: 307 PNLIKVVPYEFFVGIGDINSNFLAKSTPLPE 337
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = -2
Query: 366 LPHLESIQHGHVVGGPVSAQGSLVHRQSPPAFEHEYFRERCRVSRHRGQ 220
+P+L+ ++H H+ +S + P F+ Y+++ S+HR +
Sbjct: 761 IPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYKD----SKHRAE 805
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 168 SPRQNDGVRLRAWRGRRSDHDG 233
SP D L+ WRG S H G
Sbjct: 108 SPTSEDAKSLKNWRGSESKHTG 129
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 2.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 356 WKAFNMATWSEARSPPRAL 300
W ++N A ++EA PP+A+
Sbjct: 403 WNSYNQAHFNEAHPPPKAV 421
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 338 ATWSEARSPPRALWCIDSRRRPSSTNISGNVVELAAIVVRASPTPSTKPN 189
AT S ++P SRR+ + ++ S + ++ PTP TKP+
Sbjct: 589 ATSSIKKNPSSIFRRFSSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPS 638
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 4.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 263 NISGNVVELAAIVVRASPT---PSTKPNTIILPRRGSIGSLARMV 138
N N V+ A+ SPT P+TK T P +G + LA+ +
Sbjct: 352 NQDSNSVQPQALAAAESPTTKAPTTKAPTSEAPPKGHVKQLAKQL 396
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 4.5
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = -3
Query: 383 PLLCSLSHIWKAFNMATWSEARSPPRALWCIDSRRRPSSTNISGNVVELAAIVVRASPTP 204
P+ CSL I N S S + + +RPS V EL + + AS TP
Sbjct: 788 PIACSLQQIEHWVNEKVASHLMSVFPSKVILRKNQRPSDFASLVAVSELTGVNLSASSTP 847
Query: 203 S 201
S
Sbjct: 848 S 848
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 396 WASSPFVVFSLPHLESIQHGHVVG 325
W SSPF+ FS S+ VG
Sbjct: 35 WCSSPFMAFSCTQKPSVSENENVG 58
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 24.6 bits (51), Expect = 5.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 402 GSWASSPFVVFSLPHLESIQHGHVVGGPVSA 310
GSW + + LP L QHG G V+A
Sbjct: 180 GSWDFNDNIADPLPKLSDDQHGTRCAGEVAA 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,889
Number of Sequences: 5004
Number of extensions: 24111
Number of successful extensions: 92
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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