Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4081
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.6  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    25   8.1  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   8.1  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 443 ESHKLNKSVILTDSKSCLQAIV 378
           +S+KLN SVIL+D  SC + ++
Sbjct: 856 KSNKLNLSVILSDIYSCREEVL 877


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 205 PVVVASLAQRSAVSLPKMPL 264
           P+V+A+  QRSAV L ++PL
Sbjct: 53  PIVLATGKQRSAVDLIRIPL 72


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 473 IAILEALSFIESHKLNKSVI-LTDSKSCLQAIVANQFKSKSKFP 345
           ++I E L   ES + + S +   +S +C    V  QF+S SK+P
Sbjct: 661 LSIAEILPADESLRYSSSSVPFYESSTCAPIDVVFQFESSSKWP 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,782
Number of Sequences: 5004
Number of extensions: 43404
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)