Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4081
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0087 + 676501-677907                                             34   0.095
07_01_0085 + 663694-665022                                             33   0.13 
07_01_0086 + 672173-673603                                             33   0.17 
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827...    29   2.7  
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730           28   6.2  
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391...    28   6.2  
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175...    28   6.2  

>07_01_0087 + 676501-677907
          Length = 468

 Score = 33.9 bits (74), Expect = 0.095
 Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
 Frame = +1

Query: 394 QLLESVR-ITDLFSLWDS--MNDSASRIAMDSPQKTGSLRGAFKIENH 528
           + L  +R + D+F L D+  +N + +R+AM  P++ GSLR A + ++H
Sbjct: 107 EFLRYIRELCDVFGLMDAVRLNTAVTRVAMAPPRRDGSLRWAVRSKHH 154


>07_01_0085 + 663694-665022
          Length = 442

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +1

Query: 394 QLLESVR-ITDLFSLWDS--MNDSASRIAMDSPQKTGSLRGAFKIENH 528
           +LL  +R   D F L D+  +N + +R+AM  P++ GSLR A + + H
Sbjct: 89  ELLRYIRDFCDAFGLMDAVRLNTTVTRVAMAPPRRDGSLRWAVRSKRH 136


>07_01_0086 + 672173-673603
          Length = 476

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 394 QLLESVR-ITDLFSLWDS--MNDSASRIAMDSPQKTGSLRGAFKIENH 528
           +LL  +R   D F L D+  +N + +R+AM  P++ GSLR A +   H
Sbjct: 112 ELLRYIRDFCDAFGLMDAVRLNTTVTRVAMAPPRRDGSLRWAVRSRRH 159


>02_05_0684 -
           30880527-30880753,30881952-30882124,30882687-30882754,
           30882860-30882973,30883281-30883438,30883516-30883654,
           30883851-30883907,30884064-30884140,30884324-30884462,
           30884590-30884668,30885047-30885174,30885269-30885352,
           30886072-30886191,30886274-30886375,30886470-30886617,
           30887404-30887749,30887851-30887968,30888309-30888370,
           30888798-30888947,30889049-30889169,30889269-30889319,
           30889427-30889567
          Length = 933

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 421 DLFSLWDSMNDSASRIAMDSPQKTGSLRGAFKIENHIVFGNPDSGANTTL 570
           +L  L +SM  +AS +A D P    S R      N +  GN  +G +  L
Sbjct: 6   ELVQLAESMRQAASLLADDDPSDEASPRRPSTFLNAVALGNVGAGKSAVL 55


>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
          Length = 1072

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +2

Query: 83  SVVFTLTKTSLLPTRIPSKKAIVV*LLGVNH*NKFCNDPYSQLLWHLWHKDLQ 241
           S  F L +       +P        +LG  H  +FC  P S  LW  W + L+
Sbjct: 29  SACFLLPRAGATAAALPGCAPCAGPVLGDGHRVEFCGWPCSSALWRRWVERLR 81


>11_08_0035 -
           27838495-27838655,27838750-27838897,27838987-27839192,
           27839291-27839972,27840074-27840247,27840963-27841181,
           27841281-27841400,27841540-27841680,27841762-27841801,
           27841969-27842129,27842506-27842589,27842659-27842721,
           27842808-27842885,27842980-27842984,27843228-27843313,
           27843354-27843544,27844089-27844166,27844255-27844365,
           27844757-27844927,27845026-27845198,27845748-27845928
          Length = 1090

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 497 LPVFCGESIAILEALSFIESHKLNKSVILTDSKSCL 390
           LP FC +   ILE+L F   ++   +  L  +K CL
Sbjct: 251 LPSFCKDMFRILESLDFNSQYEDGATTRLKTAKRCL 286


>11_08_0021 +
           27716298-27716478,27717137-27717309,27717408-27717578,
           27717967-27718077,27718168-27718245,27718642-27718832,
           27718873-27718958,27719202-27719206,27719301-27719378,
           27719465-27719527,27719597-27719680,27720049-27720209,
           27720377-27720416,27720774-27720893,27720993-27721211,
           27721927-27722100,27722202-27722883,27722986-27723185,
           27723269-27723407,27723502-27723677
          Length = 1043

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 497 LPVFCGESIAILEALSFIESHKLNKSVILTDSKSCL 390
           LP FC +   ILE+L F   ++   +  L  +K CL
Sbjct: 251 LPSFCKDMFRILESLDFNSQYEDRATTRLKTAKRCL 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,205,053
Number of Sequences: 37544
Number of extensions: 260116
Number of successful extensions: 571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)