Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4081
         (583 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR541820-1|CAG46619.1|  286|Homo sapiens RNASEH1 protein.              36   0.079
BT019670-1|AAV38476.1|  286|Homo sapiens ribonuclease H1 protein.      36   0.079
BC002973-1|AAH02973.1|  286|Homo sapiens ribonuclease H1 protein.      36   0.079
AJ224117-1|CAA11835.1|  286|Homo sapiens RNase HII protein.            36   0.079
AF048995-1|AAC78564.1|  286|Homo sapiens ribonuclease H1 protein.      36   0.079
AF048994-1|AAC78563.1|  286|Homo sapiens ribonuclease H1 protein.      36   0.079
AF039652-1|AAC09261.1|  286|Homo sapiens ribonuclease H type II ...    36   0.079
AC108488-1|AAX82026.1|  286|Homo sapiens unknown protein.              36   0.079

>CR541820-1|CAG46619.1|  286|Homo sapiens RNASEH1 protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.079
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = -3

Query: 470 AILEALSFIESHKLNKSVILTDSKSCLQAIV-------ANQFKSKSKFPYILKIKNLLFS 312
           A  +A+   ++  +NK V+ TDS   +  I         N +K+ +    I K   +   
Sbjct: 189 AACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALE 248

Query: 311 CHSKNIEVVLAWLPGHSGILGNETADLCAKD 219
             ++ +++    +PGHSG +GNE AD  A++
Sbjct: 249 RLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279


>BT019670-1|AAV38476.1|  286|Homo sapiens ribonuclease H1 protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.079
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = -3

Query: 470 AILEALSFIESHKLNKSVILTDSKSCLQAIV-------ANQFKSKSKFPYILKIKNLLFS 312
           A  +A+   ++  +NK V+ TDS   +  I         N +K+ +    I K   +   
Sbjct: 189 AACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALE 248

Query: 311 CHSKNIEVVLAWLPGHSGILGNETADLCAKD 219
             ++ +++    +PGHSG +GNE AD  A++
Sbjct: 249 RLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279


>BC002973-1|AAH02973.1|  286|Homo sapiens ribonuclease H1 protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.079
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = -3

Query: 470 AILEALSFIESHKLNKSVILTDSKSCLQAIV-------ANQFKSKSKFPYILKIKNLLFS 312
           A  +A+   ++  +NK V+ TDS   +  I         N +K+ +    I K   +   
Sbjct: 189 AACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALE 248

Query: 311 CHSKNIEVVLAWLPGHSGILGNETADLCAKD 219
             ++ +++    +PGHSG +GNE AD  A++
Sbjct: 249 RLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AJ224117-1|CAA11835.1|  286|Homo sapiens RNase HII protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.079
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = -3

Query: 470 AILEALSFIESHKLNKSVILTDSKSCLQAIV-------ANQFKSKSKFPYILKIKNLLFS 312
           A  +A+   ++  +NK V+ TDS   +  I         N +K+ +    I K   +   
Sbjct: 189 AACKAIEQAKTQNINKLVLYTDSMFTINGITNWVRGWKKNGWKTSAGKEVINKEDFVALE 248

Query: 311 CHSKNIEVVLAWLPGHSGILGNETADLCAKD 219
             ++ +++    +PGHSG +GNE AD  A++
Sbjct: 249 RLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AF048995-1|AAC78564.1|  286|Homo sapiens ribonuclease H1 protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.079
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = -3

Query: 470 AILEALSFIESHKLNKSVILTDSKSCLQAIV-------ANQFKSKSKFPYILKIKNLLFS 312
           A  +A+   ++  +NK V+ TDS   +  I         N +K+ +    I K   +   
Sbjct: 189 AACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALE 248

Query: 311 CHSKNIEVVLAWLPGHSGILGNETADLCAKD 219
             ++ +++    +PGHSG +GNE AD  A++
Sbjct: 249 RLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AF048994-1|AAC78563.1|  286|Homo sapiens ribonuclease H1 protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.079
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = -3

Query: 470 AILEALSFIESHKLNKSVILTDSKSCLQAIV-------ANQFKSKSKFPYILKIKNLLFS 312
           A  +A+   ++  +NK V+ TDS   +  I         N +K+ +    I K   +   
Sbjct: 189 AACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALE 248

Query: 311 CHSKNIEVVLAWLPGHSGILGNETADLCAKD 219
             ++ +++    +PGHSG +GNE AD  A++
Sbjct: 249 RLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AF039652-1|AAC09261.1|  286|Homo sapiens ribonuclease H type II
           protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.079
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = -3

Query: 470 AILEALSFIESHKLNKSVILTDSKSCLQAIV-------ANQFKSKSKFPYILKIKNLLFS 312
           A  +A+   ++  +NK V+ TDS   +  I         N +K+ +    I K   +   
Sbjct: 189 AACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALE 248

Query: 311 CHSKNIEVVLAWLPGHSGILGNETADLCAKD 219
             ++ +++    +PGHSG +GNE AD  A++
Sbjct: 249 RLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AC108488-1|AAX82026.1|  286|Homo sapiens unknown protein.
          Length = 286

 Score = 36.3 bits (80), Expect = 0.079
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
 Frame = -3

Query: 470 AILEALSFIESHKLNKSVILTDSKSCLQAIV-------ANQFKSKSKFPYILKIKNLLFS 312
           A  +A+   ++  +NK V+ TDS   +  I         N +K+ +    I K   +   
Sbjct: 189 AACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALE 248

Query: 311 CHSKNIEVVLAWLPGHSGILGNETADLCAKD 219
             ++ +++    +PGHSG +GNE AD  A++
Sbjct: 249 RLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,610,951
Number of Sequences: 237096
Number of extensions: 1590470
Number of successful extensions: 3422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3422
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)