Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4081
         (583 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    57   2e-08
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       54   1e-07
AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p pro...    30   2.6  
AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease...    30   2.6  
AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,...    30   2.6  
AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,...    30   2.6  

>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 36/94 (38%), Positives = 58/94 (61%)
 Frame = -3

Query: 491  VFCGESIAILEALSFIESHKLNKSVILTDSKSCLQAIVANQFKSKSKFPYILKIKNLLFS 312
            V   E+IAILEA+   ++ +  K +I +DS S + +I   Q  + + F Y  +I++L+  
Sbjct: 984  VLTSETIAILEAIELTKNRR-GKFIICSDSLSAVDSI---QNTNNNSF-YPSRIRSLITQ 1038

Query: 311  CHSKNIEVVLAWLPGHSGILGNETADLCAKDATT 210
             H+  I+++  W+PGHSGI GNE AD  AK A++
Sbjct: 1039 -HAPKIKIM--WIPGHSGIKGNELADQAAKSASS 1069


>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 41/108 (37%), Positives = 54/108 (50%)
 Frame = -3

Query: 491  VFCGESIAILEALSFIESHKLNKSVILTDSKSCLQAIVANQFKSKSKFPYILKIKNLLFS 312
            +F  E+ AIL+A  F  S    KSVI TDS S L AI    +      P   +++++L S
Sbjct: 999  IFTAEAFAILKACQFA-SKNAGKSVICTDSLSSLSAI--RNWNHND--PTTQEVRHIL-S 1052

Query: 311  CHSKNIEVVLAWLPGHSGILGNETADLCAKDATTTGCMDHYRIYSNDL 168
             H K I   L W+P H GI GNE AD  A++   T  +      S DL
Sbjct: 1053 SHPKKI--TLLWVPSHQGIHGNELADKAAQEMRLTPSILFTPFNSKDL 1098


>AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p
           protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
 Frame = -3

Query: 482 GESIAILEALSFIESHKLNKSVILTDSKSCLQAIVA-------NQFKSKSKFPY--ILKI 330
           GE  A + A+       + K  I TDS+  + +I           +K K+  P   ++  
Sbjct: 227 GEIQAAIHAIKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDF 286

Query: 329 KNLLFSCHSKNIEVVLAWLPGHSGILGNETADLCAKDAT 213
           K L       NI V   ++  H GI GNE AD  A+  +
Sbjct: 287 KELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQGS 325


>AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease H1
           protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
 Frame = -3

Query: 482 GESIAILEALSFIESHKLNKSVILTDSKSCLQAIVA-------NQFKSKSKFPY--ILKI 330
           GE  A + A+       + K  I TDS+  + +I           +K K+  P   ++  
Sbjct: 227 GEIQAAIHAIKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDF 286

Query: 329 KNLLFSCHSKNIEVVLAWLPGHSGILGNETADLCAKDAT 213
           K L       NI V   ++  H GI GNE AD  A+  +
Sbjct: 287 KELDKLLQDNNITVKWNYVEAHKGIEGNEMADKLARQGS 325


>AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,
           isoform A protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
 Frame = -3

Query: 482 GESIAILEALSFIESHKLNKSVILTDSKSCLQAIVA-------NQFKSKSKFPY--ILKI 330
           GE  A + A+       + K  I TDS+  + +I           +K K+  P   ++  
Sbjct: 227 GEIQAAIHAIKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDF 286

Query: 329 KNLLFSCHSKNIEVVLAWLPGHSGILGNETADLCAKDAT 213
           K L       NI V   ++  H GI GNE AD  A+  +
Sbjct: 287 KELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQGS 325


>AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,
           isoform B protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
 Frame = -3

Query: 482 GESIAILEALSFIESHKLNKSVILTDSKSCLQAIVA-------NQFKSKSKFPY--ILKI 330
           GE  A + A+       + K  I TDS+  + +I           +K K+  P   ++  
Sbjct: 208 GEIQAAIHAIKTALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDF 267

Query: 329 KNLLFSCHSKNIEVVLAWLPGHSGILGNETADLCAKDAT 213
           K L       NI V   ++  H GI GNE AD  A+  +
Sbjct: 268 KELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQGS 306


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,012,982
Number of Sequences: 53049
Number of extensions: 448944
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)