Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4081
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein...    30   1.0  
AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical ...    30   1.4  
U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AL132865-12|CAB60601.1|  345|Caenorhabditis elegans Hypothetical...    28   4.2  
AC006642-7|AAF39828.1|  154|Caenorhabditis elegans Hypothetical ...    28   4.2  
AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein
           1.0, isoform c protein.
          Length = 251

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
 Frame = -3

Query: 482 GESIAILEALSFIESHKLNKSVILTDSKSCLQA--IVANQFKSKS-KFPYILKIKN--LL 318
           GE IA+ +A+      +L K VI TDS   +Q+  I  + +K K  K     ++ N  +L
Sbjct: 148 GELIAVQKAIEKAIEKRLPKVVIKTDSNLLVQSMNIWIHGWKRKGWKTSTGSEVLNQDVL 207

Query: 317 FSCHS--KNIEVVLAWLPGHSGILGNETADLCAK 222
               +  + ++V    + GH+GI GNE AD  A+
Sbjct: 208 MKIDNLRQKLKVKFLHVRGHAGIDGNEKADELAR 241


>AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical
           protein ZC581.3 protein.
          Length = 691

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 400 LESVRITDLFSLWDSMNDSASRIAMDSPQKTGSLRGAF 513
           LES++  D  +L D +  SA R   ++ Q+T  + GAF
Sbjct: 286 LESIKQEDFTTLLDDLITSAERDPTETVQRTSEINGAF 323


>U97403-7|AAB52475.2|  179|Caenorhabditis elegans Hypothetical
           protein T10E9.8 protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -2

Query: 132 GILVGKRLVFVKVNTTLIFKALFLPDLGSATSKIYINALQVRS 4
           GIL+ +RL F+ ++TT+    +FL D   A S I++ A+  RS
Sbjct: 78  GILMKRRL-FITIHTTITMTLMFLTD-ALAISIIFLMAIGKRS 118


>AL132865-12|CAB60601.1|  345|Caenorhabditis elegans Hypothetical
           protein Y62E10A.14 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 451 DSASRIAMDSPQKTGSLRGAFKIENHIVFGNPDSGANTT 567
           DS  R+   +   T S+RG   +E  IV+ N  +  NT+
Sbjct: 243 DSQGRLMASTASITCSIRGKRHVETRIVYNNNSNARNTS 281


>AC006642-7|AAF39828.1|  154|Caenorhabditis elegans Hypothetical
           protein F49H12.2 protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 509 HLKLRIILYLGIQTAEPTQ 565
           HLKL+I LYL +  AEPT+
Sbjct: 11  HLKLKIALYLYVVDAEPTK 29


>AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.2 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +1

Query: 211 VVASLAQ-RSAVSLPKMPLW--PGNQARTTSMFLEWQLK 318
           ++ SL Q R++ SLP    W  P +  RTT  FL+W+ K
Sbjct: 53  IIGSLVQQRTSESLPTRFQWETPIHMDRTTEEFLDWREK 91


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -3

Query: 419 VILTDSKSCLQAIVANQFKSKSKFPYI-LKIKNLLFSCHSKNI 294
           ++L D K+CLQA  ++Q KS S  P + +KI+ LL    S+ I
Sbjct: 312 IVLRDGKTCLQA-ESSQNKSSSMQPVMPVKIEFLLTGSVSQKI 353


>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 135 ARKQSLFSYWE*IIRINSVMIHTASCCGIFGTKICSFI 248
           ++K  L++YW  ++ ++S+ +HT S   I      S I
Sbjct: 177 SKKFLLYAYWAMLMEVSSIFLHTRSILHISKLSTTSMI 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,437,335
Number of Sequences: 27780
Number of extensions: 239596
Number of successful extensions: 598
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)