Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4080
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   1.5  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   1.9  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   3.4  
SPBC19C2.03 |rpc10|rpb12|DNA-directed RNA polymerase I, II and I...    26   4.4  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 372 SPRYCPLCASNLRRWPHCA 428
           SPRYCP   + + R+PH A
Sbjct: 290 SPRYCPSLEAKVTRFPHKA 308


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 142 YRGPLSLAPGQPANVLGADGRPLDTLEVNLDRAAHYTSKALGVHLLKKRSAVIAPISTV 318
           YR     +P QP + LG +    D L   L+R++H         LL   + +  P+S++
Sbjct: 770 YRFVFKFSPSQPLSSLGKNKEKYDAL---LERSSHGVLPVQSKMLLYNSNHISCPLSSI 825


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 STVAVAHSPLITPAAHIAYSAPLATAHYA 396
           S + ++ SP  TP+ ++  S P A+ HY+
Sbjct: 159 SRIGLSSSPTNTPSPNLPVSQPSASPHYS 187


>SPBC19C2.03 |rpc10|rpb12|DNA-directed RNA polymerase I, II and III
           subunit Rpc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 63

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 148 LCSCPRARSTVRCMQAVRCRRWAPRVRH 65
           LC+   AR+T++  + +RCR    RV +
Sbjct: 23  LCADCGARNTIQAKEVIRCRECGHRVMY 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,974
Number of Sequences: 5004
Number of extensions: 31997
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)