Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4080
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 32 0.28
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 30 1.5
07_03_1026 - 23369298-23370326 29 2.0
06_01_0486 - 3455030-3455770 29 2.0
07_01_0534 - 3949551-3950350,3950997-3951006 29 3.4
10_02_0187 - 6447189-6448532 28 4.5
08_02_1316 - 26088302-26088405,26089203-26089317 28 6.0
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 28 6.0
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 28 6.0
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390 28 6.0
06_01_0866 + 6582131-6583294 28 6.0
04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880 28 6.0
03_06_0044 + 31255284-31256012 28 6.0
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 28 6.0
01_06_0477 - 29615671-29616249 28 6.0
04_04_0095 - 22775340-22776017 27 7.9
01_05_0465 + 22485728-22485835,22486125-22486955 27 7.9
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 32.3 bits (70), Expect = 0.28
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -1
Query: 204 PAVSAEDVGGLAGGKGQRPSVVAQGRDQRCGVCKRCGVGDGRHE----SAIYGRQHAGQH 37
PA + E+ GG GG +V ++GR R + G GD E +A HA +H
Sbjct: 189 PAAAGEEEGG--GGVFFCVAVTSRGRTDRLSYFQAEGDGDDAEEVARATAALCLDHAPEH 246
Query: 36 HQLHH 22
H HH
Sbjct: 247 HHWHH 251
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 210 EGPAVSAEDVGGLAGGKGQRPSVVAQGRDQRCGVCKRCGV 91
+G S+ D + G G RPS A G CGV +R G+
Sbjct: 511 QGVDFSSLDQRMILGENGTRPSYSASGNCNNCGVRERSGI 550
>07_03_1026 - 23369298-23370326
Length = 342
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 138 AQGRDQRCGVCKRCGVGDGRHESAIYGRQHAGQHHQLHHS 19
A GRD K+C G+GR E A ++ +G HS
Sbjct: 102 AGGRDDGASAIKKCKDGEGRQEDAKNAQESSGMTSPAVHS 141
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 41 CPACWRPYMADSWRPSPTPHRLHTP 115
CP+C PY + RP PTP + +P
Sbjct: 72 CPSCHPPYTPPTPRPPPTPPYVPSP 96
>07_01_0534 - 3949551-3950350,3950997-3951006
Length = 269
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = -2
Query: 338 SGECATATVLMGAMTAERFFNRWTPRALLV*CAARSKLTSRVSRGLPSAPRTLAGWPGAR 159
SG A + G TA RW PR + A S T +R + WP AR
Sbjct: 48 SGALAAGSGRGGVGTASARRGRWRPRQAVAGATAASGATVEQARAAAAGSEARLLWPAAR 107
>10_02_0187 - 6447189-6448532
Length = 447
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 136 PRARSTVRCMQAVRCRRWAPRVRHIRPPTCRTTPP 32
P A VRC A CRRWA V R PP
Sbjct: 53 PNAADVVRC--AATCRRWASVVAKEADALSRALPP 85
>08_02_1316 - 26088302-26088405,26089203-26089317
Length = 72
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 61 RPPTCRTTPPASSFCKWS 8
RP +CRT+P AS C++S
Sbjct: 7 RPASCRTSPAASPCCEYS 24
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 289 SASSTGGRRELCWCSAPR 236
S SS GGRR WC+ PR
Sbjct: 335 STSSFGGRRRGSWCTPPR 352
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 93 VGDGRHESAIYGRQHAGQHHQLHHSVSGL 7
+GDGR +IYG + A ++ ++ H+ GL
Sbjct: 123 LGDGRGGESIYGTKFADENFKIKHTGPGL 151
>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
Length = 519
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/26 (42%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +1
Query: 184 VLGADGRPLDTLEVNLDR-AAHYTSK 258
V+GADG+P + +++LDR +A++T +
Sbjct: 285 VVGADGKPTPSFDIHLDRLSANWTRR 310
>06_01_0866 + 6582131-6583294
Length = 387
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -1
Query: 186 DVGGLAGGKGQRPS----VVAQGRDQRCGVCKRCGVGDG 82
DV G GG GQRP+ ++ + +Q C + G G G
Sbjct: 2 DVTGDGGGGGQRPNFPLQLLGKKEEQTCSTSQTAGAGGG 40
>04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880
Length = 237
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -1
Query: 177 GLAGGKGQRPSV-VAQGRDQRCGVCKRC 97
G+AGG G+RP + R++ GVC +C
Sbjct: 4 GVAGGGGERPCMCYFHPREEVVGVCSQC 31
>03_06_0044 + 31255284-31256012
Length = 242
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 27 EAGGVVLHVGGRIWRTRGAHRLHR 98
E GG GRIWR R +HR R
Sbjct: 51 ETGGGERRTAGRIWRGRRSHRRRR 74
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 226 NLDRAAHYTSKALGVHLLKKR 288
NLDRA + KA G+ LL+KR
Sbjct: 223 NLDRAISFYEKACGMELLRKR 243
>01_06_0477 - 29615671-29616249
Length = 192
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 204 PAVSAEDVGGLAGGKGQRPSVVAQGRDQRCGVCKRCGVGDGRHESA-IYGRQHAG 43
PAV + GG GG R S VA + GV + VG G H SA + GR+ G
Sbjct: 106 PAVVRQQRGG--GGLLLRQSGVALAWGKSAGVLRAEEVGSGVHGSAVVQGRRGVG 158
>04_04_0095 - 22775340-22776017
Length = 225
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = -1
Query: 234 VQVNFESVEGPAVSAEDVGGLAGGKGQRPSVVAQGRDQRCGVCKR---CGVGDGRHESAI 64
++V V G E GG GG R V A +R V R CG GDG + A
Sbjct: 14 LEVKVVRVAGVEARPEGGGGGGGGLFVRYYVPAGDGKRRIRVDTREVPCGGGDGEEDGAF 73
Query: 63 YG 58
+G
Sbjct: 74 WG 75
>01_05_0465 + 22485728-22485835,22486125-22486955
Length = 312
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 15 LQNDEAGGVVLHVGGRIWRTRGAHRLHR 98
LQ+D GG+ H GGR W G R R
Sbjct: 196 LQDDAVGGLEFHRGGREWVPVGPTRRGR 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,994,968
Number of Sequences: 37544
Number of extensions: 299102
Number of successful extensions: 1329
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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