Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4080
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81054-10|CAB02882.3| 561|Caenorhabditis elegans Hypothetical p... 29 3.1
Z81515-10|CAH60782.1| 413|Caenorhabditis elegans Hypothetical p... 27 7.1
Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical pr... 27 9.4
U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF005246-1|AAB95119.1| 556|Caenorhabditis elegans voltage-depen... 27 9.4
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +1
Query: 196 DGRPLDTLEVNLDRAAHYTSKALGVHLLKKRSAVIAPISTVAVAHSPLITPAAHIAYSAP 375
+G+ LD V + +SK + V L K++ +AP STVA A P+ AA + AP
Sbjct: 99 NGKILDD-SVKVGEVGFDSSKFVVVMLSKRKVTEVAPSSTVATAAEPVPVAAAPASNPAP 157
Query: 376 LA 381
A
Sbjct: 158 AA 159
>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
F21G4.6 protein.
Length = 1885
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 103 AVRCRRWAPRVRHIRPPTCRTTPPASSFCKWSVL 2
A++C W P V +R PT PP C VL
Sbjct: 1316 AMKCFNWVPVVEILRKPTITCLPPTGHVCDVMVL 1349
>Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical
protein T06E4.8 protein.
Length = 199
Score = 29.5 bits (63), Expect = 1.8
Identities = 44/140 (31%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Frame = +1
Query: 58 AVYGGLVAPIAYTAPLAYTAPLIAPLGNYRGPLSLAPG----QPANVLGADGRPLDTLEV 225
A++GG P+ +AP+A TAP PL P+ +A PA VL A PL
Sbjct: 51 ALFGGASTPVL-SAPVAKTAPSAIPLAAPALPVPIAAAPFFTPPAPVLAAPA-PLLAPPA 108
Query: 226 NLDRAAH--YTSKAL-----------GVHLLKKRSAVIAPISTVAVAHSPLI-TPA-AHI 360
+ A + S AL G S V+AP+ VA +P+ PA A +
Sbjct: 109 PVFAAPRPVFASPALAPVAPMAPILRGPAFAYAPSPVLAPVGVAPVAPAPVFAAPALAPV 168
Query: 361 A--YSAPLATAHYAPLTYAA 414
A +AP YAP AA
Sbjct: 169 APVLAAPRFVPAYAPFARAA 188
>Z81054-10|CAB02882.3| 561|Caenorhabditis elegans Hypothetical
protein F01D4.3 protein.
Length = 561
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +3
Query: 9 DHLQNDEAGGVVLHVGGR----IWRTRGAHRLHRTACIHRTV 122
DH++ +A G V+ + + I RG LH+ CIHR +
Sbjct: 358 DHMKKAKATGTVVPIAEKVRFCIGAARGIEYLHQNNCIHRDI 399
>Z81515-10|CAH60782.1| 413|Caenorhabditis elegans Hypothetical
protein F26H11.2g protein.
Length = 413
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 304 PISTVAVAHSPLITPAAHIAYSAP-LATAH 390
PI + V P+ PA+H+A+ P AT H
Sbjct: 83 PIKKITVFQKPVEPPASHVAFHTPGSATPH 112
>Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 501 MNLSFILFRIFTFCQLTNNSINLPV 427
+++ FI IF+FC T+ S LPV
Sbjct: 209 ISVLFIFISIFSFCLKTHQSFRLPV 233
>Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 501 MNLSFILFRIFTFCQLTNNSINLPV 427
+++ FI IF+FC T+ S LPV
Sbjct: 209 ISVLFIFISIFSFCLKTHQSFRLPV 233
>U23523-7|AAC46562.2| 85|Caenorhabditis elegans Hypothetical
protein F53A9.7 protein.
Length = 85
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 84 GRHESAIYGRQHAGQHHQLHH 22
G H +G QH HH+ HH
Sbjct: 57 GEHHGGHHGVQHYESHHESHH 77
>AF005246-1|AAB95119.1| 556|Caenorhabditis elegans
voltage-dependent potassium channelalpha subunit
protein.
Length = 556
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 501 MNLSFILFRIFTFCQLTNNSINLPV 427
+++ FI IF+FC T+ S LPV
Sbjct: 207 ISVLFIFISIFSFCLKTHQSFRLPV 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,367,206
Number of Sequences: 27780
Number of extensions: 206456
Number of successful extensions: 756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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