Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4079
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    41   2e-04
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    29   0.63 
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    27   2.5  
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    26   4.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   5.9  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.8  

>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +2

Query: 230 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 409
           M I VK L G E  +DI P+  +S +K  V  K  IP  QQ+         DD   + Y 
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESY- 59

Query: 410 NIKEGTKLNLVV 445
           +++ G+ L+LV+
Sbjct: 60  HLEGGSVLHLVL 71


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +2

Query: 167 VLKTPDSSVTQYFKTVKIISKMKITVKQLQGGECLIDIYPSMLISELKRHV 319
           +L+ P S V +  KT+    K K+ VK    G+ ++DI P + I E+K ++
Sbjct: 61  LLQEPGSYVGEVIKTM---GKNKVLVKVHPEGKYVVDISPDIDIKEIKPNI 108


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +2

Query: 137 VPEPRLSPS*VLKTP------DSSVTQYFKTVKIISKMKITVKQLQGGECLIDI 280
           VP+PR++    +K P      D ++  YFK     +   +   QL GG  ++D+
Sbjct: 59  VPKPRIASLRTIKHPVRSEVIDKALMLYFKKPSSFTGEDVVELQLHGGTAVVDV 112


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 227 KMKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVE 346
           K+K+ V+ +QG  CL       + S+  R + RK    +E
Sbjct: 83  KVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIE 122


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 481  ALQK-TRHVRQGCCKYCKQTSEDWFKKKFDKMSWDEVDRLCYDWL 612
            ALQK T+ +     +  ++  + W+++   K  WDE D+    W+
Sbjct: 2175 ALQKITQLIPSLTIRESREYLQKWYEEWCGKQDWDESDKSVVCWI 2219


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 672 HQSRCHSPM*AGRLNTSFVQQPVIAKSVNFIPGHFIKLLL 553
           H +  HSP      +T+ +      + V F PGHFI+ +L
Sbjct: 290 HGAITHSPP-INNCSTNILNHMTRLRIVPFAPGHFIEYIL 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,181
Number of Sequences: 5004
Number of extensions: 49732
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)