Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4079
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2445|AAF55498.1|  130|Drosophila melanogaster CG7215-PA...    73   4e-13
BT024445-1|ABC86507.1|   84|Drosophila melanogaster IP01714p pro...    41   0.001
AE014134-2997|AAF53724.1|   84|Drosophila melanogaster CG10679-P...    41   0.001
AE014297-3146|AAF55988.1|  706|Drosophila melanogaster CG13855-P...    31   1.5  
AF136606-1|AAD33695.1|  414|Drosophila melanogaster DHR23 protein.     30   3.4  
AF132147-1|AAD33594.1|  414|Drosophila melanogaster DNA repair p...    30   3.4  
AE014135-60|AAF59352.1|  414|Drosophila melanogaster CG1836-PA, ...    30   3.4  

>AE014297-2445|AAF55498.1|  130|Drosophila melanogaster CG7215-PA,
           isoform A protein.
          Length = 130

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
 Frame = +2

Query: 230 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 409
           M+IT+K L+G +C I++ P+  I E+K  +  +L I    QK         ++ TI  YP
Sbjct: 1   MQITIKVLKGKDCTIEVAPTSTILEVKHQIEAELQISATNQKLLLLGRPLNNEQTIASYP 60

Query: 410 NIKEGTKLNLVVKKP---ESLYDASFKHY 487
           NIKEGTKLNLVV KP   +S+     KHY
Sbjct: 61  NIKEGTKLNLVVIKPCLRDSILRGFRKHY 89


>BT024445-1|ABC86507.1|   84|Drosophila melanogaster IP01714p
           protein.
          Length = 84

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 26/72 (36%), Positives = 36/72 (50%)
 Frame = +2

Query: 230 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 409
           M I VK L G E  IDI P+  +  +K  V  K  IP +QQ+         DD T   Y 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADY- 59

Query: 410 NIKEGTKLNLVV 445
            ++ G+ L+LV+
Sbjct: 60  KVQGGSVLHLVL 71


>AE014134-2997|AAF53724.1|   84|Drosophila melanogaster CG10679-PA
           protein.
          Length = 84

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 26/72 (36%), Positives = 36/72 (50%)
 Frame = +2

Query: 230 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 409
           M I VK L G E  IDI P+  +  +K  V  K  IP +QQ+         DD T   Y 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADY- 59

Query: 410 NIKEGTKLNLVV 445
            ++ G+ L+LV+
Sbjct: 60  KVQGGSVLHLVL 71


>AE014297-3146|AAF55988.1|  706|Drosophila melanogaster CG13855-PA
           protein.
          Length = 706

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +2

Query: 236 ITVK-QLQGGECLIDIYPS-MLISELKRHVARKLHIPVE 346
           +TVK +L   E L  +YP+ ML+ E+K+ +ARK  +  E
Sbjct: 56  VTVKFRLSDSEILAQVYPNCMLLGEIKQDLARKFEVAPE 94


>AF136606-1|AAD33695.1|  414|Drosophila melanogaster DHR23 protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 230 MKITVKQLQGGECLIDIYPSMLISELKRHV--ARKLHIPVEQQKXXXXXXXXXDDHTIQM 403
           M IT+K LQ     I+  P   + ELK+ +   R      E+QK         DD T+  
Sbjct: 1   MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGS 60

Query: 404 YPNIKE 421
           Y N+ E
Sbjct: 61  Y-NVDE 65


>AF132147-1|AAD33594.1|  414|Drosophila melanogaster DNA repair
           protein Rad23 protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 230 MKITVKQLQGGECLIDIYPSMLISELKRHV--ARKLHIPVEQQKXXXXXXXXXDDHTIQM 403
           M IT+K LQ     I+  P   + ELK+ +   R      E+QK         DD T+  
Sbjct: 1   MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGS 60

Query: 404 YPNIKE 421
           Y N+ E
Sbjct: 61  Y-NVDE 65


>AE014135-60|AAF59352.1|  414|Drosophila melanogaster CG1836-PA,
           isoform A protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 230 MKITVKQLQGGECLIDIYPSMLISELKRHV--ARKLHIPVEQQKXXXXXXXXXDDHTIQM 403
           M IT+K LQ     I+  P   + ELK+ +   R      E+QK         DD T+  
Sbjct: 1   MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGS 60

Query: 404 YPNIKE 421
           Y N+ E
Sbjct: 61  Y-NVDE 65


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,243,350
Number of Sequences: 53049
Number of extensions: 514025
Number of successful extensions: 1356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)