Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4079
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 38 0.009
U46670-4|AAC48175.1| 332|Caenorhabditis elegans Suppressor prot... 29 4.1
U43891-1|AAB61087.1| 332|Caenorhabditis elegans SUP-10 precurso... 29 4.1
U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL023828-4|CAA19469.1| 462|Caenorhabditis elegans Hypothetical ... 29 4.1
AL023828-3|CAA19468.1| 572|Caenorhabditis elegans Hypothetical ... 29 4.1
AL023828-2|CAA19449.1| 570|Caenorhabditis elegans Hypothetical ... 29 4.1
Z81575-3|CAB04629.2| 313|Caenorhabditis elegans Hypothetical pr... 27 9.5
U80838-5|AAT48617.1| 317|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 37.5 bits (83), Expect = 0.009
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = +2
Query: 230 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 409
M I VK L G E +DI P+ + +K V K IP QQ+ DD T Y
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADY- 59
Query: 410 NIKEGTKLNLVV 445
+ G+ L+LV+
Sbjct: 60 KVLGGSVLHLVL 71
>U46670-4|AAC48175.1| 332|Caenorhabditis elegans Suppressor protein
10 protein.
Length = 332
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -1
Query: 237 IFILEIILTVLKYCVTEESGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 70
+FI I+L L YC + F D G GTP+S+ +I+E ++ + LV
Sbjct: 5 VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59
>U43891-1|AAB61087.1| 332|Caenorhabditis elegans SUP-10 precursor
protein.
Length = 332
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -1
Query: 237 IFILEIILTVLKYCVTEESGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 70
+FI I+L L YC + F D G GTP+S+ +I+E ++ + LV
Sbjct: 5 VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59
>U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical
protein F11D5.3b protein.
Length = 767
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 500 MSDKDAANTANKLLRIGSRRSLIKCPGM---KLTDFAMTGCWTKEVLRRPAY 646
M+D D + GS + ++ P M KL + + CW E RRP++
Sbjct: 697 MTDDDVVENLQSMSSTGSLKQVLSRPRMCPSKLYNEQILPCWNYESSRRPSF 748
>U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical
protein F11D5.3a protein.
Length = 797
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 500 MSDKDAANTANKLLRIGSRRSLIKCPGM---KLTDFAMTGCWTKEVLRRPAY 646
M+D D + GS + ++ P M KL + + CW E RRP++
Sbjct: 727 MTDDDVVENLQSMSSTGSLKQVLSRPRMCPSKLYNEQILPCWNYESSRRPSF 778
>AL023828-4|CAA19469.1| 462|Caenorhabditis elegans Hypothetical
protein Y17G7B.2c protein.
Length = 462
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 517 CKYCKQTSEDWFKKKFD 567
CK C+ T+EDW KK D
Sbjct: 70 CKQCRPTAEDWKAKKAD 86
>AL023828-3|CAA19468.1| 572|Caenorhabditis elegans Hypothetical
protein Y17G7B.2b protein.
Length = 572
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 517 CKYCKQTSEDWFKKKFD 567
CK C+ T+EDW KK D
Sbjct: 72 CKQCRPTAEDWKAKKAD 88
>AL023828-2|CAA19449.1| 570|Caenorhabditis elegans Hypothetical
protein Y17G7B.2a protein.
Length = 570
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 517 CKYCKQTSEDWFKKKFD 567
CK C+ T+EDW KK D
Sbjct: 70 CKQCRPTAEDWKAKKAD 86
>Z81575-3|CAB04629.2| 313|Caenorhabditis elegans Hypothetical
protein R08H2.3 protein.
Length = 313
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = -1
Query: 315 CLFNSDMSILGYISIKHSPPCNCLTVIFILEIILTVLKYCVTEESGVFNT*DGERRGSGT 136
C+ + + GY I + CL ++F+L I T L Y V F+ + R T
Sbjct: 174 CITDDVLQRPGYFIISTTNTTFCLCLLFMLSIFATQLFYFVFSIFNHFSHTVAKSR--AT 231
Query: 135 PRSQQRLMIQESVQ 94
R Q++ +I +Q
Sbjct: 232 ARQQRKFVIAMCIQ 245
>U80838-5|AAT48617.1| 317|Caenorhabditis elegans Hypothetical
protein F47F6.9 protein.
Length = 317
Score = 27.5 bits (58), Expect = 9.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 481 ALQKTRHVRQGCCKYCKQTSEDW 549
++QK++ + C YC++ SE+W
Sbjct: 99 SMQKSKFLVTACSTYCEEGSEEW 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,184,196
Number of Sequences: 27780
Number of extensions: 274670
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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