Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4077
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         36   0.005
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   5.1  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   6.8  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   9.0  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   9.0  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   9.0  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   9.0  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
 Frame = +2

Query: 386 VMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDS--LEDEGEVVSD 559
           +  K   G + K      T  D  AQ  +++ L   +PN  I+GEEDS  L +  +  S 
Sbjct: 29  IKEKSAAGALTKDDKSPVTIGDFGAQAIVISMLKDAFPNDPIVGEEDSDFLRENTQTCSR 88

Query: 560 -W-LVNEI------DKEILKLQCPPNLSRSQGRGYCSGG-------VDPLDGTSEYTQGF 694
            W LV E        KE+ +++    +     +G   GG       +DP+DGT  + +G 
Sbjct: 89  VWELVQETIQHATEYKELGQIKSAEEMMSIIDQGSYHGGRNGRMWTLDPIDGTKGFLRG- 147

Query: 695 LEHVTVLIGIAGNETPVAGVI 757
                + + +  N  PV   I
Sbjct: 148 -AQYAICLALIENGKPVVSAI 167


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 556 THNFTLILQTIFF--TYYF*VRILSCK*CNNTALSRPICFCLIVVFTLFHYTKFPFAHYI 383
           TH FT  ++TIFF  T  F  ++ S     N  +S    F L +V  L  +T+  F  ++
Sbjct: 137 THTFTNSIETIFFFLTILFLSKLNSVP--LNKKISYLYTFLLAIVSVLGFFTRITFLAFV 194


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 734 HSQLYQLVQSHVLRILEYIL-KFHQVDPPPHYNILFLDFL 618
           H   YQ +QS VL +++ ++ K+    PPP+  ++  + +
Sbjct: 241 HYPTYQRIQSAVLTLVDVLVSKYELKVPPPNEPLILFELI 280


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 587 ILKLQCPPNLSRSQGRGYCSGGVDPLDGTSEYTQGFLEHVTVLIGIAGNE 736
           +L+ + P NL   Q  G  +  ++P        Q    H+ +L+G A +E
Sbjct: 698 LLETKTPMNLFSDQTIGSITNTIEPTAAAKNVVQFLGFHMRILVGRADHE 747


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 618 QEVKEEDIVVGGWIHLMELQNILK 689
           Q++KE  I+ G W HL+    I K
Sbjct: 656 QQMKERKIIYGQWKHLLNALRIRK 679


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 341 SSVSVANRAGKIVRDVMSKGEL 406
           S +++ NR GK+ + + SKG++
Sbjct: 235 SKIAIINREGKLTQSLQSKGDV 256


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 578 DKEIL-KLQCPPNLSRSQGRGYCSG 649
           DKE+L K  CPP    +  RGY  G
Sbjct: 889 DKELLAKATCPPQHKDTYDRGYVRG 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,456
Number of Sequences: 5004
Number of extensions: 55470
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)