Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4077
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835... 45 1e-09
07_01_0658 + 4923205-4923334,4923448-4923526,4923629-4923723,492... 37 0.020
03_01_0024 - 214141-215097 32 0.58
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 31 1.3
12_02_0129 - 13981684-13982529 29 5.4
12_02_0112 + 13783758-13784717 29 5.4
10_07_0078 + 12657239-12658324 29 5.4
02_01_0523 - 3792864-3792962,3793509-3793610,3793861-3793974,379... 29 5.4
11_01_0760 + 6385866-6385955,6386629-6386682,6386863-6387012,638... 28 9.4
01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248 28 9.4
01_06_1739 - 39573754-39574194,39574485-39574664 28 9.4
>03_05_0170 +
21482962-21483018,21483133-21483183,21483313-21483500,
21483587-21483671,21483848-21483902,21483998-21484041,
21485045-21485113,21485207-21485307,21485396-21485452,
21485540-21485636
Length = 267
Score = 45.2 bits (102), Expect(2) = 1e-09
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +2
Query: 329 RLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLK 508
+ LA +V A AG+I+R + + + KG+ D TE D++ + I L YP+ K
Sbjct: 5 QFLAVAVDAAKNAGEIIRKGFYQTK-NVEHKGQVDLVTETDKACEDLIFNHLRKHYPDHK 63
Query: 509 IIGEEDS--LEDEGEVVSD--WLVNEID 580
IGEE S L ++ D W+V+ +D
Sbjct: 64 FIGEETSAALGATADLTDDPTWIVDPLD 91
Score = 35.1 bits (77), Expect(2) = 1e-09
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 653 VDPLDGTSEYTQGFLEHVTVLIGIAGNETPVAGVIH 760
VDPLDGT+ + GF V V IG+ + P GV++
Sbjct: 87 VDPLDGTTNFVHGF-PFVCVSIGLTVGKIPTVGVVY 121
>07_01_0658 +
4923205-4923334,4923448-4923526,4923629-4923723,
4923802-4923851,4924216-4924340,4924703-4924769,
4924871-4924960,4925281-4925392,4925597-4925667
Length = 272
Score = 36.7 bits (81), Expect = 0.020
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +2
Query: 323 IVRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPN 502
+ RL+ + A+ AG+++R + + I++K T ADR A+ +V+ + +P+
Sbjct: 9 VERLVEVAQRAADAAGEVLRKYFRQ-RVEIIDKEDQSPVTIADREAEEAMVSVILKSFPS 67
Query: 503 LKIIGEEDS---LEDEGEVVSDWLVNEID 580
+ GEE+ +E + V W+++ ID
Sbjct: 68 HAVFGEENGWRCVEKSADYV--WVLDPID 94
>03_01_0024 - 214141-215097
Length = 318
Score = 31.9 bits (69), Expect = 0.58
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 515 GEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLSRSQGRGYCSGGVDPLDGTSEYTQGF 694
GE +E GEV + E+++E+++++ +GRG C GG + G QG
Sbjct: 257 GEVGEVEQRGEVGEGLVGGELEEEVVRVRLV------EGRGRCRGGGGVVVGDEGSAQGV 310
Query: 695 LE 700
LE
Sbjct: 311 LE 312
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +2
Query: 326 VRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTE---ADRSAQRCIVASLAAQY 496
VRL +S +V ++ DVM+ +G V D QT+ D A +V+S
Sbjct: 101 VRLDDTSAAVDEGGASLIDDVMNTLPVGGVASFDDGPQTDKNAQDEGALIDVVSSTVLND 160
Query: 497 PNLKIIGEEDSLEDEGEVVSDWLV--NEIDKEILKLQC 604
++ ++ DS+ +EG + D LV E KE++ + C
Sbjct: 161 ASIDLVKASDSVSEEGTGM-DILVQPGEDIKEMVTIAC 197
>12_02_0129 - 13981684-13982529
Length = 281
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 422 GKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDK 583
G DY D + CI+A L A+ P + G D E GE+V VN+I +
Sbjct: 151 GSTDYDERVDAWSLGCIMAELLARKPLFR--GSSDR-EQLGEIVDVLGVNDIKR 201
>12_02_0112 + 13783758-13784717
Length = 319
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 422 GKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDK 583
G DY D + CI+A L A+ P + G D E GE+V VN+I +
Sbjct: 189 GSTDYDERVDAWSLGCIMAELLARKPLFR--GSSDR-EQLGEIVDVLGVNDIKR 239
>10_07_0078 + 12657239-12658324
Length = 361
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +2
Query: 356 ANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLK---IIGEE- 523
A+R G V+++ + + G+ ++ + D Q + DR + + P II E+
Sbjct: 120 AHRIGSRVKELNERMD-GLFKQAEADQQADTDRLKSSSTPGNPHSGNPRRTAPGIIHEDI 178
Query: 524 --DSLEDEGEVVSDWLVNEIDKEIL 592
D +E++ ++ DWL+N DK+ L
Sbjct: 179 VGDKIEEDKRMLVDWLINH-DKKYL 202
>02_01_0523 -
3792864-3792962,3793509-3793610,3793861-3793974,
3794060-3794158,3794725-3794779,3795266-3795433,
3795668-3795735,3796133-3796195,3796425-3796703
Length = 348
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +2
Query: 308 GSVPLIVRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLA 487
G V + +LA + N ++ + ++K I KG D T+ D+ ++ I+ +
Sbjct: 95 GQVENWIEILA--ILQVNMEITVIMEAVNKPR-NIHYKGVADLVTDTDKLSESVILEVVR 151
Query: 488 AQYPNLKIIGEEDSLEDEGEVVSDWL 565
+P+ I+GEE L G+ +S++L
Sbjct: 152 KTFPDHLILGEEGGL--IGDALSEYL 175
>11_01_0760 +
6385866-6385955,6386629-6386682,6386863-6387012,
6387120-6387461
Length = 211
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 476 ASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLSRSQGRGYCSGGV 655
+++ +P ++ + E + + + W V E K L ++CP + G V
Sbjct: 19 STIGGCFPTVEEVDPESYNDSQTHFTTSWFVEESKKGCLDMRCPGFQRTGGSHPFVPGQV 78
Query: 656 -DPLDGTSEYTQ 688
+P+ TS Q
Sbjct: 79 INPVSSTSRRKQ 90
>01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248
Length = 248
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 518 EEDSLEDEGEVVSD-WLVNEIDKEILKLQCPPNLSRSQGRGYCSGG 652
E D G++ S WL ++D ++ L P + + GY SGG
Sbjct: 19 EADIFSGAGQLPSSPWLDLDLDDDVQDLSMAPTTANAVSSGYGSGG 64
>01_06_1739 - 39573754-39574194,39574485-39574664
Length = 206
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 308 GSVPLIVRLLASSVSVANRAGKIVRDVMSKG 400
GSVP V L+ SSVSV + + R+ +KG
Sbjct: 126 GSVPRRVHLVVSSVSVTRQDAALWRNATAKG 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,606,261
Number of Sequences: 37544
Number of extensions: 323331
Number of successful extensions: 804
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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