Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4077
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42833-4|AAA83579.1| 319|Caenorhabditis elegans Hypothetical pr... 100 1e-21
AL032655-9|CAA21725.3| 339|Caenorhabditis elegans Hypothetical ... 58 9e-09
AL032655-8|CAH60799.1| 348|Caenorhabditis elegans Hypothetical ... 58 9e-09
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 30 1.6
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 30 1.6
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 30 1.6
L14324-4|AAA28184.1| 159|Caenorhabditis elegans Hypothetical pr... 29 3.6
>U42833-4|AAA83579.1| 319|Caenorhabditis elegans Hypothetical
protein ZK430.2 protein.
Length = 319
Score = 100 bits (240), Expect = 1e-21
Identities = 66/165 (40%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Frame = +2
Query: 302 MYGSVPLIVRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKD----DYQTEADRSAQRC 469
M+ + RL+ASSV V+ AG ++++VM+ G+L I++K + D QTEADR AQ C
Sbjct: 1 MFNKASFLTRLVASSVRVSEAAGGLIKNVMAGGDLKIIDKSEHGSGYDPQTEADRRAQYC 60
Query: 470 IVASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLSRSQGRGYCSG 649
IV SL + N+ IIGEE+ E+ + + + E L N+ + +
Sbjct: 61 IVQSLQKHFKNINIIGEEEDTTACPEIEMGFSADVLQMERLMSTELKNIQENDVVVW--- 117
Query: 650 GVDPLDGTSEY-------TQGFLEHVTVLIGIAGNETPVAGVIHQ 763
VDPLDGTSE LE VTVLIGIA PVAG+IHQ
Sbjct: 118 -VDPLDGTSEVALAVKNKNMALLEQVTVLIGIAYKGRPVAGIIHQ 161
>AL032655-9|CAA21725.3| 339|Caenorhabditis elegans Hypothetical
protein Y6B3B.5a protein.
Length = 339
Score = 57.6 bits (133), Expect = 9e-09
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Frame = +2
Query: 407 GIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLE-DEGEV----VSDWLVN 571
G+ ++GK++ T AD + I+ + ++P L+I+ EE E E E+ + ++ V
Sbjct: 74 GLTDEGKEELLTRADLISNHLIL-DILQRFPQLQIVSEEKKSEFSEREIEPYRLDNYAVW 132
Query: 572 EIDKEILKLQCPPNLSRSQGRGYCSGGVDPLDGTSEYTQGFLEHVTVLIGIAGNETPVAG 751
+ KEIL L S R + VDPLD T E+T+G E+VTV+ I + P+ G
Sbjct: 133 QSVKEILDKIPSRRLQLSDVRVF----VDPLDATQEFTEGLTEYVTVMACIVLDAEPIFG 188
Query: 752 VIHQ 763
I++
Sbjct: 189 AIYR 192
>AL032655-8|CAH60799.1| 348|Caenorhabditis elegans Hypothetical
protein Y6B3B.5b protein.
Length = 348
Score = 57.6 bits (133), Expect = 9e-09
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Frame = +2
Query: 407 GIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLE-DEGEV----VSDWLVN 571
G+ ++GK++ T AD + I+ + ++P L+I+ EE E E E+ + ++ V
Sbjct: 83 GLTDEGKEELLTRADLISNHLIL-DILQRFPQLQIVSEEKKSEFSEREIEPYRLDNYAVW 141
Query: 572 EIDKEILKLQCPPNLSRSQGRGYCSGGVDPLDGTSEYTQGFLEHVTVLIGIAGNETPVAG 751
+ KEIL L S R + VDPLD T E+T+G E+VTV+ I + P+ G
Sbjct: 142 QSVKEILDKIPSRRLQLSDVRVF----VDPLDATQEFTEGLTEYVTVMACIVLDAEPIFG 197
Query: 752 VIHQ 763
I++
Sbjct: 198 AIYR 201
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 308 GSVPLIVRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQT-EADRS 457
GSV ++ + + + VA RAG+ V E+ +EKG D T ADRS
Sbjct: 403 GSVTMLTKQTETPLHVAARAGRAVNCTFLMKEMLDLEKGDDGESTIRADRS 453
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 308 GSVPLIVRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQT-EADRS 457
GSV ++ + + + VA RAG+ V E+ +EKG D T ADRS
Sbjct: 403 GSVTMLTKQTETPLHVAARAGRAVNCTFLMKEMLDLEKGDDGESTIRADRS 453
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 308 GSVPLIVRLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQT-EADRS 457
GSV ++ + + + VA RAG+ V E+ +EKG D T ADRS
Sbjct: 403 GSVTMLTKQTETPLHVAARAGRAVNCTFLMKEMLDLEKGDDGESTIRADRS 453
>L14324-4|AAA28184.1| 159|Caenorhabditis elegans Hypothetical
protein ZK112.5 protein.
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -2
Query: 737 SHSQLYQLVQSHVLRILEYILKFHQVDPPPHYNILFLDFLKDLEDIVILIFP-YLFHSLT 561
S ++L + ++S L + +L + + N+L LD +DLE IV L+ P Y+ +LT
Sbjct: 32 SKAELLESLESRKLGLETRVLDKYHENHVAFENVLVLDAPQDLETIVNLLLPWYMGKTLT 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,726,587
Number of Sequences: 27780
Number of extensions: 307705
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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