Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4077
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 325 C*VTSFVSISCQPSWENRSRCNEQRGTW 408
           C V S  S+SC PS ++ ++C     +W
Sbjct: 149 CLVFSSGSVSCVPSVKHVAKCATDFSSW 176


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 596 LQCPPNLSRSQGRGY 640
           L CPPNL  +  RGY
Sbjct: 310 LFCPPNLRLTSERGY 324


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 596 LQCPPNLSRSQGRGY 640
           L CPPNL  +  RGY
Sbjct: 400 LFCPPNLRLTSERGY 414


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 440 FDSRLYPFPLYQVP 399
           FD RL+ FP+  VP
Sbjct: 305 FDGRLFEFPIKFVP 318


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 419 KGKDDYQTEADRSAQRCIVASLAAQYPN 502
           KG+   +TE +RS +  I++S    Y N
Sbjct: 286 KGRSRDRTERERSKETKIISSNNYNYKN 313


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 419 KGKDDYQTEADRSAQRCIVASLAAQYPN 502
           KG+   +TE +RS +  I++S    Y N
Sbjct: 297 KGRSRDRTERERSKETKIISSNNYNYKN 324


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 407  GIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDSLE 535
            G+V + +  Y +  +RS ++        Q     +IG EDS+E
Sbjct: 1555 GLVVQLQRGYNSGNNRSGEQANSQQQQQQQSGEPVIGMEDSVE 1597


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,667
Number of Sequences: 438
Number of extensions: 4036
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)