Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4076
         (711 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027865-1|AAH27865.1|  404|Homo sapiens C11orf16 protein protein.     33   1.3  
AK223377-1|BAD97097.1|  467|Homo sapiens chromosome 11 open read...    33   1.3  
AJ400877-5|CAB92289.1|  467|Homo sapiens C11orf16 protein protein.     33   1.3  
BC050451-1|AAH50451.2|  482|Homo sapiens zinc finger (CCCH type)...    30   7.1  

>BC027865-1|AAH27865.1|  404|Homo sapiens C11orf16 protein protein.
          Length = 404

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +3

Query: 177 HHHTCAYTLCY-CTCSCPDSINSW 245
           HHH C   LC  C C CP    +W
Sbjct: 269 HHHACCQLLCQGCLCGCPPCGTTW 292


>AK223377-1|BAD97097.1|  467|Homo sapiens chromosome 11 open reading
           frame 16 variant protein.
          Length = 467

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +3

Query: 177 HHHTCAYTLCY-CTCSCPDSINSW 245
           HHH C   LC  C C CP    +W
Sbjct: 269 HHHACCQLLCQGCLCGCPPCGTTW 292


>AJ400877-5|CAB92289.1|  467|Homo sapiens C11orf16 protein protein.
          Length = 467

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +3

Query: 177 HHHTCAYTLCY-CTCSCPDSINSW 245
           HHH C   LC  C C CP    +W
Sbjct: 269 HHHACCQLLCQGCLCGCPPCGTTW 292


>BC050451-1|AAH50451.2|  482|Homo sapiens zinc finger (CCCH type),
           RNA-binding motif and serine/arginine rich 2 protein.
          Length = 482

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = -1

Query: 522 KSRERRNSVSYDSWTRMYIYTRLMRHGSWSHCDYRSCYSMSYKGGSHGVSQNRGNHSMGH 343
           KSRER NS S     R     R    GS S    RSC S   +  S   S++RG    G+
Sbjct: 413 KSRERHNSRSRGR-NRDRSRDRSRGRGSRSRSRSRSCRSRRSRSQSSSRSRSRGRRRSGN 471

Query: 342 QSR 334
           + R
Sbjct: 472 RDR 474


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.317    0.124    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,891,504
Number of Sequences: 237096
Number of extensions: 1682021
Number of successful extensions: 4641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4638
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)