Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4076
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    30   1.9  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    30   1.9  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    30   1.9  
U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 504 FSSLCSLDRCNIWCSFYLSWTLVEETFFSC-CSDSSSAHRP 623
           F+ LC +D+  ++ +FY  W+++E T  +   +DS + + P
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSP 208


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 504 FSSLCSLDRCNIWCSFYLSWTLVEETFFSC-CSDSSSAHRP 623
           F+ LC +D+  ++ +FY  W+++E T  +   +DS + + P
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSP 208


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 504 FSSLCSLDRCNIWCSFYLSWTLVEETFFSC-CSDSSSAHRP 623
           F+ LC +D+  ++ +FY  W+++E T  +   +DS + + P
Sbjct: 168 FNQLCKMDKRILFNNFYSKWSILEVTMLATKYNDSKNFYSP 208


>U64854-3|AAB18315.2|  304|Caenorhabditis elegans Hypothetical
           protein K11C4.2 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 543 CSFYLSWTLVEETFFSCCSDSSSAHRPRRRVTSIS 647
           C   ++W L++     C SD    H PR  V  I+
Sbjct: 244 CIDMVAWNLLDAAHIDCSSDEGHVHLPRNIVAVIA 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.124    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,456,231
Number of Sequences: 27780
Number of extensions: 255742
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)