Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4073
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   1.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   6.7  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   8.9  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   8.9  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 601  SVQYSNKSIATYLLSANFYISATKLLSRVTDPVW 702
            S QY+  S  TY+LS N  I A  + SR +  VW
Sbjct: 3521 SYQYACFSFITYILSINNRIPAKLVFSRDSGGVW 3554


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 200  IQRFHKWYTIYVRARNSVETYHNHYLVH*HKASPKIF 310
            ++RFHK   I VR     ++ ++ +L   H+ SPK F
Sbjct: 912  LKRFHKGDKIRVRVLGIHDSRNHKFLPISHRVSPKQF 948


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 305 IFHNFLSSGVHMCSKSSLIAQQLIHIQTETH 397
           +FH FLS+    CS    +   LI   +ETH
Sbjct: 75  VFHWFLSTNFQDCSTLPSVKSTLIWPASETH 105


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 612 LKQIYSDLLTLRELLYLSHKTSIK 683
           +K+ Y D++   +L+ +SH T+IK
Sbjct: 1   MKRSYKDIIRFLKLIGISHSTAIK 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,119
Number of Sequences: 5004
Number of extensions: 59986
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)