Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4073
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187...    29   5.3  
06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194     28   9.3  
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741...    28   9.3  

>07_03_0923 -
           22617627-22617860,22618486-22618542,22618612-22618768,
           22618875-22619014,22619642-22619777,22619874-22620142,
           22620272-22620492,22620648-22620707,22620859-22620915,
           22621008-22621405,22621929-22622000,22622098-22622169,
           22622246-22622317,22622574-22622645,22622738-22622867,
           22623065-22623170
          Length = 750

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 499 DEISK*F*YSRLIFVNPQYATSSCSLGFIH*RLTSVQYSN 618
           DEI   F  +R   V PQ+ +S  S+GFIH +      SN
Sbjct: 700 DEIQSDFVKNRRFNVAPQWFSSEISMGFIHAKTAVPPMSN 739


>06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194
          Length = 569

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 203 QRFHKWYTIYVRARNSVETYHNHYLVH*HKASPKIFHNFLSSGVHMCSKSSLIAQQLIHI 382
           +R   ++ + V  +N    Y N  L +  K SP++ H     G     K  L ++QL+ +
Sbjct: 198 RRLRYFFLLVVERKNVQREYFNSCLEYAGKCSPEVIHISDRGGAGRKFKMHLTSKQLVRL 257


>06_01_0964 -
           7417158-7417517,7417596-7417868,7418400-7418810,
           7419270-7419347
          Length = 373

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -1

Query: 278 PNNDYDMSQRYYEHVHKLCTIYE----IVEYYKENIPQSWYYLMYVYESV 141
           P ND++   R  E +    T+Y     +  YY   +P+S+Y  ++  +SV
Sbjct: 100 PGNDFNQLFRSLEKIKTSTTMYHKGDSLPSYYISGLPKSYYSRLFPRQSV 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,201,469
Number of Sequences: 37544
Number of extensions: 314755
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)