Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4073
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z68161-2|CAA92297.1|  361|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical
           protein F25H9.3 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 134 FTKLIHTRTLNNTMTEVCFLYNIQRFHKWYTIYVR 238
           FTK + TR   N  TE C+  ++  FH  Y+ Y +
Sbjct: 157 FTKYMETRLATNFYTEACYNVSLHSFH--YSTYCK 189


>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 401 SNAFRFECGSVVVLLSLT*NTCELLKTRNYEKFLEKPYVSG--PNNDYDMSQRYYEHVHK 228
           +++F  +  S   L  L   TC+L  T   E  LEK Y+      N Y  + +    +  
Sbjct: 140 TSSFNPQWSSFSSLKYLLEGTCQLSSTEKSENGLEKIYIIDFPTGNQYTKTNK---KIWT 196

Query: 227 LCTIYEIVEYYK 192
           LC +  I EY K
Sbjct: 197 LCNLLTITEYIK 208


>Z68161-2|CAA92297.1|  361|Caenorhabditis elegans Hypothetical
           protein F20C5.4 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 140 KLIHTRTLNNTMT-EVCFLYNIQRFHKWYTIYVRARN 247
           K  +T TLN+  T EV F Y + +F++   +Y  +RN
Sbjct: 97  KCAYTITLNDDYTGEVKFYYGLSKFYQNNRLYFNSRN 133


>Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical
           protein F35H8.2 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 374 IHIQTETHYCFT-VEIVRAAVPDKSIRSPTSNKQPSSYYYKQMMK*VNNF 520
           + I+ + HY F  V+ V   V +++   P SNK  ++Y Y   +  ++++
Sbjct: 320 LFIRADPHYDFGFVQCVHEVVFERTFFDPISNKNANNYLYGSRVNLIDDY 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,000,982
Number of Sequences: 27780
Number of extensions: 319982
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)