Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4072
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    28   1.00 
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   1.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.0  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    26   5.3  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   7.0  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   7.0  

>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 399 EGRHVWVAAEINDRCLTQLFSKTTNKNDVAVKL 301
           E  HVW+A  ++   L + F+K   +ND+ V L
Sbjct: 211 EELHVWMAQHLDAHPLFRRFTKEEEENDICVTL 243


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +3

Query: 45  GSPGLQXIRHEXKKISKMNVSKNDKRNRKSTFNYELSDLTVTVMYCEFNR 194
           G P  Q  +H+ +K  K     N  R  +S  N  + D  +   YCE  R
Sbjct: 11  GLPSQQGQKHDLQKDQKQPHVNNADRTTQSLLNSYIYDYLIKKDYCEAAR 60


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 149 FIIKSTFAVSFIIFTNIHFRYFFXL 75
           F   S F+    +FT++HF +FF L
Sbjct: 111 FFYFSLFSFFSFLFTSLHFNFFFRL 135


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 233 VPSLSLFGCNRKIPAPVDAETLGN 304
           +PS S+FG N + P P   E L N
Sbjct: 123 MPSASMFGPNPENPVPPSTEELAN 146


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 292 NSWQLYRYVIFVSCFTKKLGKAAV 363
           N +Q+YR   F  CF+KK   A++
Sbjct: 23  NGYQVYRSNPFTLCFSKKANGASI 46


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 81  KKISKMNVSKNDKRNRKSTFNYELSDLTVTVMYCEFNRHERCHKFCCPLNE 233
           K + K N+    K N ++   Y  +  + + M  + N  +  HK C PL++
Sbjct: 380 KAVPKENILATFKGNWRNCIFYSYAGESESRMLVDLNELDLVHKRCPPLDK 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,394
Number of Sequences: 5004
Number of extensions: 42794
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)