Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4072
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0088 + 684471-685154,685271-685834,685938-686222                 29   3.1  
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    28   7.2  
12_01_0044 + 349798-350173,350745-350905,351527-351662,352110-35...    27   9.6  
03_05_0871 + 28396964-28399843                                         27   9.6  

>07_01_0088 + 684471-685154,685271-685834,685938-686222
          Length = 510

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 224 PKRVPSLSLFGCNRKIPAPVDAETLGNFTA 313
           P   PSLS  G  RK+PAP   E  G + A
Sbjct: 342 PALAPSLSFVGVPRKVPAPWFFEAQGKWVA 371


>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
            41140165-41140211,41140796-41141029,41141305-41141505,
            41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 351  TQLFSKTTNKNDVAVKLPRVSASTGAGIF 265
            TQL+SK + K   AV LP  +A+ G   F
Sbjct: 1505 TQLYSKLSLKRQFAVCLPSTAAAPGVAFF 1533


>12_01_0044 +
           349798-350173,350745-350905,351527-351662,352110-352206,
           352344-352444,352658-352821,353461-353582,353667-353718
          Length = 402

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 15  SPRWRPLXTSGSPGLQXIRHEXKK 86
           +PRWRP    G P ++ + H+ ++
Sbjct: 41  APRWRPARCRGKPAVEDVVHDDEE 64


>03_05_0871 + 28396964-28399843
          Length = 959

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -3

Query: 354 LTQLFSKTTNKNDVAV----KLPRVSASTGAGIFLLQPKRERLGTRLGDNKIYGIAHV 193
           L++ F K+TN + + +    K   VSA   +  + L P  E L  +L   K++G+ HV
Sbjct: 303 LSEAFPKSTNGSKILLTTRSKEIAVSADPSSLPYELDPLSEELSFQLFITKVFGLNHV 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,092,109
Number of Sequences: 37544
Number of extensions: 259588
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)