Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4072
         (641 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010077-1|AAQ22546.1|  924|Drosophila melanogaster LD09801p pro...    29   7.1  
AE013599-1997|AAM68542.1|  924|Drosophila melanogaster CG12424-P...    29   7.1  
AE013599-1996|AAM68541.1|  924|Drosophila melanogaster CG12424-P...    29   7.1  
AE013599-1995|AAF58176.1|  924|Drosophila melanogaster CG12424-P...    29   7.1  

>BT010077-1|AAQ22546.1|  924|Drosophila melanogaster LD09801p
           protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 339 SKTTNKNDVAVKLPRVSASTGAGIFLLQPKRERLGTRLGDNKIYGIAHVY*IHSTSQS 166
           SK+T+  D    +P  + +TG     L  ++E  G   G+N + G  H   +HS+S S
Sbjct: 745 SKSTSSIDSIDTIPFANENTGTIKQRLLNRQELQGGGAGNNNVPGGGHPAHLHSSSSS 802


>AE013599-1997|AAM68542.1|  924|Drosophila melanogaster CG12424-PC,
           isoform C protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 339 SKTTNKNDVAVKLPRVSASTGAGIFLLQPKRERLGTRLGDNKIYGIAHVY*IHSTSQS 166
           SK+T+  D    +P  + +TG     L  ++E  G   G+N + G  H   +HS+S S
Sbjct: 745 SKSTSSIDSIDTIPFANENTGTIKQRLLNRQELQGGGAGNNNVPGGGHPAHLHSSSSS 802


>AE013599-1996|AAM68541.1|  924|Drosophila melanogaster CG12424-PB,
           isoform B protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 339 SKTTNKNDVAVKLPRVSASTGAGIFLLQPKRERLGTRLGDNKIYGIAHVY*IHSTSQS 166
           SK+T+  D    +P  + +TG     L  ++E  G   G+N + G  H   +HS+S S
Sbjct: 745 SKSTSSIDSIDTIPFANENTGTIKQRLLNRQELQGGGAGNNNVPGGGHPAHLHSSSSS 802


>AE013599-1995|AAF58176.1|  924|Drosophila melanogaster CG12424-PA,
           isoform A protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 339 SKTTNKNDVAVKLPRVSASTGAGIFLLQPKRERLGTRLGDNKIYGIAHVY*IHSTSQS 166
           SK+T+  D    +P  + +TG     L  ++E  G   G+N + G  H   +HS+S S
Sbjct: 745 SKSTSSIDSIDTIPFANENTGTIKQRLLNRQELQGGGAGNNNVPGGGHPAHLHSSSSS 802


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,248,990
Number of Sequences: 53049
Number of extensions: 452497
Number of successful extensions: 979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)