Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4071
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    31   0.24 
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    29   0.95 
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   2.9  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    27   2.9  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   5.1  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    26   5.1  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    26   6.7  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   6.7  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   6.7  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    25   8.9  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   8.9  

>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 264

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 33 GVDVGNDINYDTGMPLEMNKNS 98
          GVD+GNDI+ + G+PL+ N  +
Sbjct: 23 GVDLGNDIDLEKGLPLKYNSEN 44


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 63  DTGMPLEMN-KNSFHNSHNKPSFADLRGVKDEDVDKYRTENNLQNIDSPLLYLKPSAPHK 239
           D+G  ++ +   S  +S N P F  ++G +  D+D    +       SP    + S+P+ 
Sbjct: 60  DSGYRMDSSLMTSLPHSRNPPIFEAIQGEQPSDIDTLNLKKVKSGPTSPSSIDRLSSPNA 119

Query: 240 NHGDFILS 263
             GD + S
Sbjct: 120 KAGDILAS 127


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 509 PFFSALGVIVVSFFSQSCVWHDYLNKLWFIRFNWL 405
           PF   L +   S  SQS +W++Y +  W + F W+
Sbjct: 200 PFIGGL-MAKSSMKSQSDIWNEYTSGNWLMAFIWV 233


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 135 LRGVKDEDVDKYRTENNLQNIDSPLLYLK 221
           +R VKDED++ Y+    L N +  LL LK
Sbjct: 714 MREVKDEDLEFYKKWEKLLNQEERLLLLK 742


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = -3

Query: 590 ILFGSGKNAFFMGWNIPWLEFFFRYYRPFFSALGVIVVSFFSQSCVWHDYLNKLWFIRFN 411
           +L G  +  F    NI      F    PF   + +   +  S++ VW+ Y    W + F 
Sbjct: 212 LLVGQNRRTFLATMNILAQTLGFMA-GPFLGGI-LAKATIHSKNAVWNQYTVASWVMLFM 269

Query: 410 WLF 402
           W F
Sbjct: 270 WFF 272


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 303 DDAPSTTIAPKPPTLTSWDESRTDYSHSLSPPAE-EPVKSNKPKFVQIIVPYTTLRKE 473
           + APS+T  P P      D    ++S     PA+ EPVK +KPK  +   P +  R E
Sbjct: 170 ESAPSST-KPAP------DAKEPEFSSPKPKPAKSEPVKQSKPKATETARPSSFSRNE 220


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 306 DAPSTTIAPKPPTLTSWDESRTDYSHSLSPPAEEPVKSNK 425
           ++ +TT A  PP   SW+    D         EEP KS +
Sbjct: 3   ESTATTTAVPPPAEESWNADSEDVHQFYWTYTEEPHKSRR 42


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 45  GNDINYDTGMPLEMNKNSFHNS--HNKPSFADLRGVKDEDVDKYRTENNLQNIDSPLLYL 218
           GND  Y + +   +++NSF+ S   ++ S+           D   +  N +  +SP  Y 
Sbjct: 12  GNDHQYRSPLKSNVDQNSFYESSYRSRQSYHQRTKTPRSSYDSPSSSTNSKEHNSPYHYR 71

Query: 219 KPS 227
            PS
Sbjct: 72  VPS 74


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 63  DTGMPLEMNKNSFHNSHNKPSFADLRGVKDEDVDKYRTENNLQN 194
           DT  P  + KN+ ++  N P+ +++   K      ++T  N+Q+
Sbjct: 419 DTKWPQNLAKNNINSEPNTPTKSNIDTGKAHSARAHKTRKNIQS 462


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 111 HNKPSFADLRGVKDEDVDKYRTENNLQNIDSPLLYLKPSA 230
           +N+ S    +G    D D  RT +  +N++SP     PS+
Sbjct: 569 YNRSSSQTSKGYNSSDYDLLRTHSLDENVNSPTSISSPSS 608


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 554 GWNIPWLEFFFRYYRPFFSALGVIVVSFFSQSCVW 450
           GWN PW     RY+    S LG   V  F ++  W
Sbjct: 29  GWNDPWSPHSSRYHWQLHSNLGESAV--FDENDFW 61


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 102 HNSHNKPSFADLRGVKDEDVDKYRTENNLQNIDSPLLYLKPSAPHKNHGDF 254
           H+SH+  S +     + + + ++   ++   +++P  YLK   P  NH DF
Sbjct: 34  HHSHDSSSNSSSEAARLQFIQEHGHSHDA--METPGSYLKRELPQFNHRDF 82


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 282 ENEYEIYDDAPSTTIAPKPPTLTSWDESRTDYSH 383
           +N   I+D +    ++P+   L SW ++   YSH
Sbjct: 289 DNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSH 322


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +3

Query: 651 DQLSPANTFNNFYEVRETPFDIIKLPHT---IDDWTE 752
           D   P   F  FY VR TP   I  P T   + +W++
Sbjct: 215 DDEEPGMEFKRFYPVRSTPHIAILDPRTGERVKEWSK 251


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 180 NNLQNIDSPLLYLKPSAPHKNHGD 251
           NNL +  SPLL+ +PS P   H D
Sbjct: 407 NNLIDDSSPLLWREPSFPLIEHHD 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,158
Number of Sequences: 5004
Number of extensions: 69647
Number of successful extensions: 222
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)