Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4070
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   105   9e-24
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   105   9e-24
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   4.0  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   5.2  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   6.9  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   6.9  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    25   9.2  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   9.2  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  105 bits (251), Expect = 9e-24
 Identities = 47/96 (48%), Positives = 63/96 (65%)
 Frame = +2

Query: 17  VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 196
           +RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH+
Sbjct: 63  IRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHT 122

Query: 197 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 304
           LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 123 LYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  105 bits (251), Expect = 9e-24
 Identities = 47/96 (48%), Positives = 63/96 (65%)
 Frame = +2

Query: 17  VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 196
           +RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH+
Sbjct: 63  IRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHT 122

Query: 197 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 304
           LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 123 LYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -2

Query: 379 FLLLGGNT-----FLAALACLLYFIAAGL 308
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 110 VPSVAYAHWQYLFSYQS 60
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 481 FIYLFKKVLPHHKHLTLKINYLIYGLTHVTIIAYTTLAI 597
           F+Y +KK LP  ++   KI+YL   L    +++Y  + +
Sbjct: 149 FLYQYKKRLPKDENQDFKIHYL--SLLKSLLVSYAGIVV 185


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 270 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 178
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 646 IRYSFFIIIVFIFEADELPMLCTQLLSRASGHK 548
           ++Y F I     F +  LP+ C  LLSR S  K
Sbjct: 187 MKYDFIITYKTSFYSFYLPIKCALLLSRNSNQK 219


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 107 PSVAYAHWQYLFSYQSHSDDPFYVPLCFCGHPRAE 3
           PS+AYA ++Y  S    S       + F G+P AE
Sbjct: 300 PSLAYAWFEYGVSLNHSSSKAAIAYMYFMGYPVAE 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,848
Number of Sequences: 5004
Number of extensions: 54688
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)