Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4070
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...   121   7e-28
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...   121   7e-28
07_03_1639 + 28305801-28305958,28306240-28306249                       33   0.25 
03_02_0050 + 5272471-5274861                                           30   1.8  
01_05_0087 + 18018117-18018290,18019314-18019400,18019451-180195...    28   7.2  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =  121 bits (291), Expect = 7e-28
 Identities = 56/95 (58%), Positives = 66/95 (69%)
 Frame = +2

Query: 20  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 199
           R+  EA++KGRH G+GKRRGT  AR+P K LW                AKKID+H+YH +
Sbjct: 64  RRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDM 123

Query: 200 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 304
           YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 124 YMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =  121 bits (291), Expect = 7e-28
 Identities = 56/95 (58%), Positives = 66/95 (69%)
 Frame = +2

Query: 20  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 199
           R+  EA++KGRH G+GKRRGT  AR+P K LW                AKKID+H+YH +
Sbjct: 64  RRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDM 123

Query: 200 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 304
           YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 124 YMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>07_03_1639 + 28305801-28305958,28306240-28306249
          Length = 55

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 304
           MK KGN+  NKR       + +AEKAR + LSDQ
Sbjct: 1   MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 376 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 218
           LLL     L+  +CL   +     L  +HL P LLS +P+D L H H  +L H+
Sbjct: 79  LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132


>01_05_0087 +
           18018117-18018290,18019314-18019400,18019451-18019552,
           18019602-18019637,18019776-18019820,18020500-18020781,
           18020839-18020859
          Length = 248

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +1

Query: 454 NKKKHNFVLFIYLFKKVLPHHKHLTLKINYLIYG-LTHVTII---AYTTLAIH 600
           NK     +  +++FK ++ +H  + L++ ++ YG L H +++    YT + +H
Sbjct: 165 NKFSDRTLYGLHIFKDIIVNHLWIGLRVKFVSYGVLMHKSVLHLQFYTIIVLH 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,395,909
Number of Sequences: 37544
Number of extensions: 346137
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)