Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4070
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   120   1e-27
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical p...    28   8.6  
Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical p...    28   8.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  120 bits (289), Expect = 1e-27
 Identities = 55/95 (57%), Positives = 66/95 (69%)
 Frame = +2

Query: 20  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 199
           R+  EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLYH L
Sbjct: 64  REYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHEL 123

Query: 200 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 304
           Y++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 124 YLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 434
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 377 PPSWRQYVPRGACVPPL 327
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 351 RNVLPPRRRNCCRPSLEKTKPRLP 422
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical
           protein F55C9.13 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = +3

Query: 378 NCCRPSLEKTKPRLPLRSKHYVVNNK*KKTQFCFIYLFI*KSTATSQTFNIENKLFNLWP 557
           NC R SLE     + L+    +VN    +   CF+ LF+ KST      +      NL  
Sbjct: 118 NCSRTSLEVHSQNIWLQR---IVN----QFSSCFLQLFLSKSTWYHPILSAHRIQLNLLI 170

Query: 558 DARDNNCVHNIGNSSASKMNTIIIKKEYL 644
            + D +C H   N   S  +  +  K ++
Sbjct: 171 PSTDFSCEHLHVNQKMSSRDLNLFLKRWM 199


>Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical
           protein F53C11.6 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 490 LFKKVLPHHKHLTLKINYLIYGLTHVTIIAYTTLAIHR 603
           +F+  LPH   L + I Y ++G   +T+I Y+    H+
Sbjct: 29  VFRLALPHITLLVVSILYAVFGGWMLTLIKYSQQTTHQ 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,895
Number of Sequences: 27780
Number of extensions: 323695
Number of successful extensions: 935
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)