Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4065
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    28   1.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.2  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   4.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.6  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    26   5.6  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    25   9.8  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   9.8  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 182 KSLPEFTKGIPELDVPSTDPVHLDDINIDGNGL 280
           + LP+ T+  P+L +P+ + V  D++ +D NG+
Sbjct: 27  EKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGI 59


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 17  IQESAVSRTMMLIALFLFAAHVFNTNADDAY-LPPYIEACEFSNENLEQCIKEQIEKSLP 193
           I  S+V ++++L   F ++ H  N N +    L  +I     S     +C++    K LP
Sbjct: 544 IISSSVKQSLLLDGFFRWSQHCSNFNKESMLSLREFIMKALASTS---RCLRVVAAKVLP 600

Query: 194 EFTKGIPELDV 226
            F KG   LD+
Sbjct: 601 IFIKGPNNLDI 611


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 458  GDALINCVNVDVEIESKLNQVKDNNGKDHLKLGTPSYKYKIEKTTFRFEKLVQRKQRI 631
            G+   N V + V++ SKL    D   + HLK    SYK  +E    + + + +  +R+
Sbjct: 1059 GEKCANIVQLQVDLLSKL---ADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKETNERL 1113


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 221 DVPSTDPVHLDDINIDGNGLKLTFTKALM 307
           D+P++D V ++ IN   N L +   KALM
Sbjct: 468 DLPASDDVQIEFINFFLNNLSILTEKALM 496


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 485 VDVEIESKLNQVKDNNGKDHLK--LGTPSYKYKIE 583
           VDV++ SK+NQ+ D      L   +GTPS  +  E
Sbjct: 34  VDVDLVSKVNQLYDQQIAPMLSDAIGTPSVNHSFE 68


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 443 QIKGKGDALINCVNVDVEIESKLNQVKDNNGKDHLKLGTPS 565
           Q+  +G  ++N   V+  +ES L  ++     +H++  TP+
Sbjct: 456 QLVAEGKIIVNVNGVEHTVESDLVTIEKRKHTEHIRTYTPN 496


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 214 RNTLRKLRQTLLYLFFDALFEVFIGEFAGFNVW 116
           +NTLRK  +  + +    +F   +G+F+  + W
Sbjct: 331 KNTLRKNNKDFVCVLMSEIFPSRLGQFSDIDAW 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,717
Number of Sequences: 5004
Number of extensions: 68218
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)