Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4065
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1271 - 25762750-25764276                                         31   0.84 
05_06_0260 + 26736631-26736771,26736850-26736981,26737066-267372...    31   1.5  
04_03_0463 - 16200690-16200986,16202010-16202258,16202562-162026...    31   1.5  
05_01_0299 - 2322204-2322734,2324089-2326164                           29   3.4  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    28   7.8  
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020...    28   7.8  
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915           28   7.8  

>08_02_1271 - 25762750-25764276
          Length = 508

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 742 LLIALTTVLTICLIAXGARSSMSCCQFSLANCRVVSANSLFP 617
           LL+A   VLT CL+A    + +  C      C V +A   FP
Sbjct: 11  LLLAAAAVLTQCLLAAAVNTPVVQCASGTTKCTVTNAFGAFP 52


>05_06_0260 +
           26736631-26736771,26736850-26736981,26737066-26737248,
           26737344-26737370,26737482-26737689,26737863-26737944,
           26738097-26738205,26738324-26738443,26738567-26738884
          Length = 439

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 291 NVSFNPLP--SMLMSSRCTGSVEGTSSSGIPFVNSGRLFSICSLMHCSRFSLENSQASMY 118
           N S N +P  S   S+   G +  T  +G         F+      CS+ SLEN   +M 
Sbjct: 323 NSSSNEIPCGSKNGSAVTVGEISYTDITGTSASERAVTFACSEAAPCSKLSLENVNITMA 382

Query: 117 GGRYASS 97
           GG+ AS+
Sbjct: 383 GGQNASA 389


>04_03_0463 -
           16200690-16200986,16202010-16202258,16202562-16202697,
           16203150-16203368,16204137-16204515,16205010-16205253
          Length = 507

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 2/154 (1%)
 Frame = +2

Query: 20  QESAVSRTMMLIALFLFAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLPEF 199
           ++SA++R   +I   + A  +   +  D+Y    I+ C   NE +++   E     LPE+
Sbjct: 240 EDSALAR---MIFTKIIAFIILMDDTYDSYAT--IQECRKLNEAIQRW-DESATAFLPEY 293

Query: 200 TKGIPE--LDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGNF 373
            K      L       +H++D   DG   ++  TK     L   +L+E +  +     N+
Sbjct: 294 IKKFYSALLKTFKEFEIHVED---DGQ-YRIDHTKKAFQNLSAYYLQEAEWSYQ----NY 345

Query: 374 KLAFISNMSLTAEYEADGKLLILQIKGKGDALIN 475
           K +F   ++L+        L +    G+GDAL N
Sbjct: 346 KPSFEEQVALSTVTSTVPLLCVSTTVGRGDALTN 379


>05_01_0299 - 2322204-2322734,2324089-2326164
          Length = 868

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -3

Query: 441 KMRSFPSASYSAVKLMLLM----KANLKFPWSPSNLSLNSFR*LPFKPCINALVNVSFNP 274
           K RSF  ++ S++K    +     A++K P  P +LS      LP  P  +A ++ + NP
Sbjct: 404 KCRSFSDSTTSSLKASSKVGKGFSASMKGPEVPPDLSFTGAA-LPSNPSFDAKLSSNLNP 462

Query: 273 LPS 265
           LP+
Sbjct: 463 LPA 465


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 362 HGNFKLAFISNMSLTAEYEADGKLLILQIKGKGDALINCVNVDVEIESKLNQVKDNNGKD 541
           +G  ++AF +   L A  E   K L+ +  GKG   +  V   VEI   L   ++NN  D
Sbjct: 88  YGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKGADFVRAVKEIVEIYDSLKN-ENNNKSD 146


>03_02_0829 -
           11599665-11600364,11600853-11601076,11601786-11602000,
           11602300-11602377,11602593-11603907
          Length = 843

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +3

Query: 660 ENWQQLMDDLAPXAIKQIVKTVVKAINKFFASVTTQQIIKGYSP*TKLTSS 812
           E+W +L+DDL    ++  +K +V  IN    SV  Q+  +G S   KLTSS
Sbjct: 718 ESWIKLLDDLPTKDLEDAIKGLVADINH---SVPRQEKRRGTS---KLTSS 762


>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
          Length = 1270

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 68  FAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLP 193
           FA H++N    DAY P  +  C  +N ++ + + ++I K +P
Sbjct: 259 FAQHLYNDKRTDAYFPIKVWVCVSTNFDVLR-LTQEILKCIP 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,974,829
Number of Sequences: 37544
Number of extensions: 409888
Number of successful extensions: 1047
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)