Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4065
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80437-11|AAN84840.1| 184|Caenorhabditis elegans Hypothetical p... 29 3.0
U80437-12|ABO52815.1| 167|Caenorhabditis elegans Hypothetical p... 29 4.0
Z92973-8|CAO82049.1| 517|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z81554-6|CAO82038.1| 517|Caenorhabditis elegans Hypothetical pr... 29 5.3
U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine rece... 28 7.0
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 28 9.3
AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical... 28 9.3
AC006674-11|AAF39936.1| 309|Caenorhabditis elegans Hypothetical... 28 9.3
>U80437-11|AAN84840.1| 184|Caenorhabditis elegans Hypothetical
protein C43E11.12a protein.
Length = 184
Score = 29.5 bits (63), Expect = 3.0
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 1/157 (0%)
Frame = +2
Query: 44 MMLIALFLFAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLPEFTKGIPELD 223
M +F F ++ P EAC EQ I E++++ PE + PE
Sbjct: 1 MCFFPIFSFQKYIVEFKMSPIKREPE-EAC-LKPMRFEQEIPERVDE--PEEMEVQPEEI 56
Query: 224 VPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGNFKLAFISNMSL 403
+ DD + + +T L L ++ +K + + I+N
Sbjct: 57 EEEVEEDEGDDDEWEDVTMVVTVNGILDADLVRDAVERDLIKLRYAETDAPVLQINNSLY 116
Query: 404 TAEYEAD-GKLLILQIKGKGDALINCVNVDVEIESKL 511
TA +E D G ++LQ KGK +I+C + + E L
Sbjct: 117 TASWEQDLGTNMVLQSKGKEMEVISCTSTMMTAEKAL 153
>U80437-12|ABO52815.1| 167|Caenorhabditis elegans Hypothetical
protein C43E11.12b protein.
Length = 167
Score = 29.1 bits (62), Expect = 4.0
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = +2
Query: 125 EACEFSNENLEQCIKEQIEKSLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFTKAL 304
EAC EQ I E++++ PE + PE + DD + + +T L
Sbjct: 10 EAC-LKPMRFEQEIPERVDE--PEEMEVQPEEIEEEVEEDEGDDDEWEDVTMVVTVNGIL 66
Query: 305 MHGLKGSHLKEFKLKFDGDHGNFKLAFISNMSLTAEYEAD-GKLLILQIKGKGDALINCV 481
L ++ +K + + I+N TA +E D G ++LQ KGK +I+C
Sbjct: 67 DADLVRDAVERDLIKLRYAETDAPVLQINNSLYTASWEQDLGTNMVLQSKGKEMEVISCT 126
Query: 482 NVDVEIESKL 511
+ + E L
Sbjct: 127 STMMTAEKAL 136
>Z92973-8|CAO82049.1| 517|Caenorhabditis elegans Hypothetical
protein Y6G8.8 protein.
Length = 517
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 248 LDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGN 370
+++++++G +L F + LM L +LK K+ F GDH N
Sbjct: 341 IENLDLEGKS-ELEFIE-LMRYLDEKNLKRLKISFSGDHDN 379
>Z81554-6|CAO82038.1| 517|Caenorhabditis elegans Hypothetical
protein Y6G8.8 protein.
Length = 517
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 248 LDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGN 370
+++++++G +L F + LM L +LK K+ F GDH N
Sbjct: 341 IENLDLEGKS-ELEFIE-LMRYLDEKNLKRLKISFSGDHDN 379
>U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform c protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -3
Query: 510 NLLSISTSTFTQLMRASPFPLICKMRSFPSASYSAVK--LMLLMKANLKFPWSPSNLSLN 337
+L+S S TF QL+ + I + +F Y+ + + L M + WS SN++LN
Sbjct: 114 SLVSYSLYTFLQLVFPFIYTSIFLLFAFLEVDYTPMTCAIPLAMGSKTFVTWSFSNMALN 173
Query: 336 SF 331
+F
Sbjct: 174 AF 175
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 597 DLKNLFNGNKELADTTLQFANENWQQLM-DDLAPXAIKQIVKTVVKAINK 743
D+ L+N E + TT + A++ W++L+ + AP A + V ++ NK
Sbjct: 29 DINGLYNDVMEESRTTREVADDAWEELLRKNGAPEASRAAVTAMLFGRNK 78
>AC006674-12|AAO38617.1| 357|Caenorhabditis elegans Hypothetical
protein K12H6.6b protein.
Length = 357
Score = 27.9 bits (59), Expect = 9.3
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -2
Query: 685 SSMSCCQFSLANCRVVSANSLFPLNKFFKSKRSLLYLV-FV*RSAEF*MIFSVVVLNLIQ 509
S+ + C F +V A L LN F RSL+ L F + F + + ++ L+
Sbjct: 158 SAFTICLFYDLMLGIVVAGLLMELNSIFLHIRSLMNLYGFDKKLTAFRVTVILNIITLVV 217
Query: 508 FALYFNVH-VYAVNEGVSFS 452
F L NV+ +Y V S S
Sbjct: 218 FRLIVNVYMIYFVFASFSMS 237
>AC006674-11|AAF39936.1| 309|Caenorhabditis elegans Hypothetical
protein K12H6.6a protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.3
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -2
Query: 685 SSMSCCQFSLANCRVVSANSLFPLNKFFKSKRSLLYLV-FV*RSAEF*MIFSVVVLNLIQ 509
S+ + C F +V A L LN F RSL+ L F + F + + ++ L+
Sbjct: 158 SAFTICLFYDLMLGIVVAGLLMELNSIFLHIRSLMNLYGFDKKLTAFRVTVILNIITLVV 217
Query: 508 FALYFNVH-VYAVNEGVSFS 452
F L NV+ +Y V S S
Sbjct: 218 FRLIVNVYMIYFVFASFSMS 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,673
Number of Sequences: 27780
Number of extensions: 381094
Number of successful extensions: 1133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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