Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4062
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   4.4  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.8  
SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   7.7  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   7.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   7.7  

>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 602 NHRYYTFKPEETLNRQNKTNHTTSTPRVPAKKSTSTFY 489
           NH  +   P+E+ + + +  + +S+PRVP +KS   +Y
Sbjct: 120 NHASHHRMPDESASYRTRGEYESSSPRVP-QKSLRRYY 156


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 256 IYIKESRVSYTIYNSGTAELI 318
           ++ +E R+SYT+Y +G   L+
Sbjct: 197 LFSQEQRISYTVYKNGRLRLV 217


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 442 CYSISVAFCYTTFYVASHGNVIK--SILCPSPGFTLPPHQFSA 320
           C   S+  C   F+  S  + +   S+ C SP   LPPH  S+
Sbjct: 19  CIPCSLGTCLIHFHEFSSSSFMDPVSLFCSSPYPNLPPHSRSS 61


>SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 81

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 569 TLNRQNKTNHTTSTPRVPAKKSTSTFYYN*PYNILRLAVSCVLL 438
           T N  N TN TTS+    +  ++ T + +  + I  +AV+C ++
Sbjct: 36  TTNGTNGTNTTTSSTATQSSAASITNFSSGAFVIAMIAVACSVM 79


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 55  FKTARNSYIAHTVL*HYLYKLCNFSG 132
           FKT  N  +A ++L  Y+Y   N+ G
Sbjct: 282 FKTRNNDPVASSILERYVYSKKNYEG 307


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 544 ITQLPLLAFPPKSPLQPSTIINHTIYYV*LSVAFCYSISVAFCYTTFYVASHGN 383
           +T+LPLLA  P+  L+P  I+   I  +  S AF   +S  FC     +A   N
Sbjct: 57  LTRLPLLAQAPEKELEP--ILAVFINLIQESAAFEDHVS-KFCQALEQIADQNN 107


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -3

Query: 563 NRQNKTNHTTSTPRVPAKKSTSTFYYN 483
           NR+ ++NH  + P  P  ++++ + Y+
Sbjct: 147 NRRRRSNHLNNPPEAPITEASNEYVYS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,374
Number of Sequences: 5004
Number of extensions: 59904
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)