Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4061
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.0  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = +2

Query: 74  IVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIR-----IVEPSYVGM 238
           + N  +   + ++ +L P   N  Y  +A++ L  E  +    V+      IVEP+ V +
Sbjct: 660 VTNMDQYNSILMIEHLSPDH-NGNYSCVARN-LAAEVSHTQRLVVHVPPRWIVEPTDVSV 717

Query: 239 NNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGT 385
                ++L  +  G P   I  +     +S     + E  Y  I+  GT
Sbjct: 718 ERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGT 766


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 62  DSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVP 196
           +SF I++    + +  +A L           L ++  +WEE Y+P
Sbjct: 194 ESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIP 238


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 351 SHMTRFTNDSNELVYSLWMFMIGQPPPFLA 262
           SH    + D N  VY +W+  +    P LA
Sbjct: 575 SHFINHSCDPNLAVYGVWINCLDPNLPKLA 604


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 472 SEQRRVWCKLLYFENER 422
           ++  RVW   L+F NE+
Sbjct: 110 TDASRVWMPDLFFSNEK 126


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 472 SEQRRVWCKLLYFENER 422
           ++  RVW   L+F NE+
Sbjct: 110 TDASRVWMPDLFFSNEK 126


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 273 PFLARLILYSLFMPT*DGSTILITS 199
           P LAR +LY +++ T +   +  T+
Sbjct: 679 PKLARSVLYKIYLNTMESHEVRCTA 703


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +2

Query: 212 IVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGT 385
           IVEP+ V +     ++L  +  G P   I  +     +S     + E  Y  I+  GT
Sbjct: 713 IVEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGT 770


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 14  WSGKEFLRETWT 49
           WS K FLR  W+
Sbjct: 157 WSRKGFLRTRWS 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,433
Number of Sequences: 438
Number of extensions: 2839
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)