Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4058
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0156 - 41544396-41544755,41544854-41544983,41545085-415453...    30   1.8  
03_02_0629 - 9961315-9961521,9962765-9963232                           28   7.4  
01_07_0155 - 41541475-41541831,41541922-41542051,41542144-415424...    28   7.4  

>01_07_0156 -
           41544396-41544755,41544854-41544983,41545085-41545374,
           41545482-41545663,41545784-41546003,41546121-41546139,
           41546394-41546654,41546775-41546863
          Length = 516

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 645 NLICFNLGILFFLCLTSLGVYIVIMRVGLLILIMLYWVVYVPV 517
           N++   + + FF+ LTSLG  +    +G +  + +Y    +PV
Sbjct: 382 NVVWLAVAVAFFMALTSLGSQVAFQALGSIATLGMYIAYALPV 424


>03_02_0629 - 9961315-9961521,9962765-9963232
          Length = 224

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 291 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLISF 142
           ++ YRRG    +FLA      ++ ++ V I++GG+   F F  +L+ I F
Sbjct: 22  HVRYRRGDTLGLFLA------WVSLVPVFISLGGFVSHFLFRRELQGICF 65


>01_07_0155 -
           41541475-41541831,41541922-41542051,41542144-41542433,
           41542526-41542707,41542788-41543007,41543117-41543135,
           41543222-41543382
          Length = 452

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 645 NLICFNLGILFFLCLTSLGVYIVIMRVGLLILIMLYWVVYVPV 517
           N++   + + F + LTSLG  +    +G +  + +Y    +PV
Sbjct: 319 NVVWLGVAVAFVMALTSLGSQVAFQAMGSIATLGMYIAYALPV 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,662,183
Number of Sequences: 37544
Number of extensions: 91135
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)