Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4057
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.3  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   1.7  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    27   3.0  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   9.2  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 160 SVSPALRPTKARTCFTRSATFLYPPPSNRS*TRTTLTGSKLRSLRRPPTVPP 315
           S S A   T   +  + + T + PPPS  S   TT T     S+    TVPP
Sbjct: 48  SFSSASTETSTHSVTSTNITSIVPPPST-SHNSTTTTVPPTTSMNTTTTVPP 98


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 222 LVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILI 341
           L+PA I +V +K NA R  A   ++A    TTP A K ++
Sbjct: 96  LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVKAIV 135


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 163 PTTVPFSIL*SSQGLRVDAIRVVNGA 86
           P  +PFSI   +Q L +DA+R   GA
Sbjct: 221 PARLPFSIQQRAQTLAMDAVRTFEGA 246


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 405 FEWLKNLNHVSYGRLTFKYERESNYHLLE 491
           F  LK+L HVS+    F+   + +  LLE
Sbjct: 22  FSNLKSLKHVSHSETDFEVSNDEDNQLLE 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,895
Number of Sequences: 5004
Number of extensions: 47696
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)