Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4057
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 103 2e-22
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 103 2e-22
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 74 1e-13
04_03_0634 - 18211054-18212169,18213449-18214219 30 1.3
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 30 1.3
03_02_0525 - 9138107-9138237,9138327-9139301,9139379-9139507,913... 30 1.3
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 30 1.8
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 3.1
03_02_0328 - 7487759-7488340 29 3.1
07_01_0009 - 57820-59457,59537-59650 28 5.4
01_05_0775 + 25069960-25070023,25070896-25071263 28 5.4
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 28 7.2
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 103 bits (246), Expect = 2e-22
Identities = 42/97 (43%), Positives = 67/97 (69%)
Frame = +3
Query: 135 YRIENGTVVGFPGAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPT 314
+R E G + F A+ + +L +CD+L+P A+ V+N++NA ++AK I EAAN PT
Sbjct: 256 HRNEGGALKDFHDAEVMDSSELLVHECDVLIPCALGGVLNRENAPDVKAKFIIEAANHPT 315
Query: 315 TPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNL 425
P AD+IL + + ++PD+Y N+GGV VS+FEW++N+
Sbjct: 316 DPEADEILAKKGVTILPDIYANSGGVIVSYFEWVQNI 352
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 103 bits (246), Expect = 2e-22
Identities = 42/97 (43%), Positives = 68/97 (70%)
Frame = +3
Query: 135 YRIENGTVVGFPGAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPT 314
+R E G++ F GA+ + +L +CD+LVP A+ V+N++NA ++A+ I E AN PT
Sbjct: 256 HRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAAEVKARFIIEGANHPT 315
Query: 315 TPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNL 425
AD+IL + ++V+PD+Y N+GGV VS+FEW++N+
Sbjct: 316 DTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNI 352
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/63 (53%), Positives = 45/63 (71%)
Frame = +3
Query: 144 ENGTVVGFPGAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPA 323
EN + GF G A + ++L E+CD+L+PAA+ VINKDNA+ I+AK I EAAN PT P
Sbjct: 259 ENRGIKGFDGGDAIDPRSLLTEECDVLIPAALGGVINKDNANEIKAKYIIEAANHPTDPE 318
Query: 324 ADK 332
AD+
Sbjct: 319 ADE 321
>04_03_0634 - 18211054-18212169,18213449-18214219
Length = 628
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +1
Query: 229 PPPSNRS*TRTTLTGSKLRSLRRPPTVPP 315
PP S RS TT T S +R+ RPPT PP
Sbjct: 14 PPSSPRSGATTTTTTS-VRARPRPPTAPP 41
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 181 PTKARTCFTRSATFLYPPPSNRS*TRTTLTGSKLRSLRRPPTVPPHL 321
PT A T R+ PP S+ +R T S + PP PPHL
Sbjct: 484 PTFAATPVARAMALTAPPTSSPPGSRLRCTASARATSPPPPRHPPHL 530
>03_02_0525 -
9138107-9138237,9138327-9139301,9139379-9139507,
9139623-9139867,9139986-9140137,9140236-9140346
Length = 580
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 494 GPR-VSRGGGRYPIRP---IVSRITIHWAGVLQ-RRDWENPWRYPT*SPCST 634
GP+ V+R G R ++ I ITIHW GV Q R W + Y T P T
Sbjct: 61 GPKIVTREGDRVVVKVVNNIKDNITIHWHGVRQMRTGWSDGPAYVTQCPIQT 112
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 127 GRTTESRTVR*SVSPALRPTKARTCFTRSATFLYPPP---SNRS*TRTTLTGSKLRSLRR 297
G + R V S SPA+ T+ R F + PPP S S R +LT S+ R
Sbjct: 6 GAVPKPRFVSPSPSPAVAATRRRLRFPLAPPRPRPPPLRWSPPSPFRLSLTLSRSRRHSP 65
Query: 298 PPTVPP 315
PP PP
Sbjct: 66 PPPPPP 71
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +2
Query: 206 REVRHSCTRRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPH---RSQHSRDPRPLH 376
R RH RHR GH G H R+ H + H R QHS + H
Sbjct: 534 RHHRHHHDHRHRHGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEAGRNH 593
Query: 377 QR 382
R
Sbjct: 594 HR 595
>03_02_0328 - 7487759-7488340
Length = 193
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 205 TRSATFLYPPPSNRS*T--RTTLTGSKLRSLRRPPTVPP 315
T+ ATF YPPP + R + ++ R RR P+ PP
Sbjct: 51 TKYATFPYPPPPQQPPRSGRASTPSTRQRDRRRKPSRPP 89
>07_01_0009 - 57820-59457,59537-59650
Length = 583
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +2
Query: 494 GPRV-SRGGGRYPIRPIVS---RITIHWAGVLQR 583
GP+V +R G +R + + ITIHW GVLQR
Sbjct: 62 GPKVEARNGDTLLVRVVNNSPYNITIHWHGVLQR 95
>01_05_0775 + 25069960-25070023,25070896-25071263
Length = 143
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 521 RYPIRPIVSRITIHWAGVLQRRDWENPWRYPT*SPCSTFP 640
R + VS + HWA + W WR P +T P
Sbjct: 29 RLKVWAFVSDVRGHWASASPAQSWSRGWRCPLLPAAATSP 68
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 212 VRHSCTRRHRTGHK-QGQRSQDPS*DHCGGRQRSHHTCCRQDPHRSQHSRDPR 367
VR R HR H Q QR H RQR HH RQ R +RDPR
Sbjct: 118 VRRWRPRDHRDQHDHQSQRHHHRHHHH--QRQRHHHHHQRQQ-RRGSRTRDPR 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,558,803
Number of Sequences: 37544
Number of extensions: 422379
Number of successful extensions: 1317
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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