Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4057
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 189 1e-48
U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical pr... 32 0.40
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 31 0.92
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 31 0.92
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 29 2.8
U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical pr... 29 2.8
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr... 29 2.8
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 3.7
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 3.7
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 3.7
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 27 8.6
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 189 bits (461), Expect = 1e-48
Identities = 90/134 (67%), Positives = 110/134 (82%), Gaps = 2/134 (1%)
Frame = +3
Query: 129 EDYRIENGTVVGFPGAKAYEG-ENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAAN 305
ED++ NGT+ FPGAK ++ ++YEKCDI VPAA E+ I+K+NA RIQAKIIAEAAN
Sbjct: 327 EDWKDANGTIKNFPGAKNFDPFTELMYEKCDIFVPAACEKSIHKENASRIQAKIIAEAAN 386
Query: 306 GPTTPAADKILIDR-NILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNYH 482
GPTTPAAD+IL+ R + L+IPD+Y+N+GGVTVS+FEWLKNLNHVSYGRLTFKY+ E+N
Sbjct: 387 GPTTPAADRILLARGDCLIIPDMYVNSGGVTVSYFEWLKNLNHVSYGRLTFKYDEEANKM 446
Query: 483 LLESVQESLEGGAG 524
LL SVQESL G
Sbjct: 447 LLASVQESLSKAVG 460
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 68 GVIEHDGSIYNPDGINPKAL 127
G+ E+D ++YNPDGI+PK L
Sbjct: 307 GIQEYDCAVYNPDGIHPKEL 326
>U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical
protein T05E8.1 protein.
Length = 893
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 78 STTAPFTTLMASTLRPWEDYRIENGTVVGFPGAKAYEGENMLYEKCDILV--PAAIEQVI 251
S+ F+ ++ +R + I +GFPG E +++ YE C L ++EQ+I
Sbjct: 195 SSVGEFSCYLSEVIRSPDRSLIAKWVALGFPGMSDEEPDDIAYENCGFLKIRVFSVEQLI 254
Query: 252 NK-DNAHRIQAK 284
K N +I+ K
Sbjct: 255 RKMINERKIKKK 266
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 30.7 bits (66), Expect = 0.92
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 131 GLQNRERYGSXXXXXXXXXXXEHALREVRHSCTRRHRTGHKQGQRSQDPS*D-HCGGRQR 307
G Q+ +RY + E+ R ++ + HR KQ + +D + D H GG++
Sbjct: 665 GEQDYDRYNNYRDAENALIEEEYNTRHLKRTTEHPHR---KQPPQKRDNTKDQHRGGKKS 721
Query: 308 SHHTCCRQDPHR 343
SHH R+ HR
Sbjct: 722 SHHH-SRETKHR 732
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 30.7 bits (66), Expect = 0.92
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 131 GLQNRERYGSXXXXXXXXXXXEHALREVRHSCTRRHRTGHKQGQRSQDPS*D-HCGGRQR 307
G Q+ +RY + E+ R ++ + HR KQ + +D + D H GG++
Sbjct: 887 GEQDYDRYNNYRDAENALIEEEYNTRHLKRTTEHPHR---KQPPQKRDNTKDQHRGGKKS 943
Query: 308 SHHTCCRQDPHR 343
SHH R+ HR
Sbjct: 944 SHHH-SRETKHR 954
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +1
Query: 133 TTESRTVR*SVSPALRPTKARTCFTRSATFLYPPPSNRS*TRTTLTGSKLRSLRRPPT 306
T E +T + +P PT T T SAT L P S+ + T TT T + S PT
Sbjct: 430 TKEPKTTIFTTTPVPCPTTTST--TTSATTLVPTTSSSTTTTTTTTPVPVTSTTTEPT 485
>U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical
protein D1044.2b protein.
Length = 501
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 168 PGAKAYEGENMLYEKC--DILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILI 341
PG Y + C I VP +++++ A R+ +K++ E G T P+ L+
Sbjct: 52 PGTWLYRIDKAQLMPCAQPIQVPPYCDRLLS--TAPRLPSKLLEEKKEGLTLPSPGAFLV 109
Query: 342 DR-NILVIPDLYINAGGVT 395
D+ + ++P L G VT
Sbjct: 110 DQPSETIVPTLVRGGGTVT 128
>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
protein D1044.2c protein.
Length = 1090
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 168 PGAKAYEGENMLYEKC--DILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILI 341
PG Y + C I VP +++++ A R+ +K++ E G T P+ L+
Sbjct: 602 PGTWLYRIDKAQLMPCAQPIQVPPYCDRLLS--TAPRLPSKLLEEKKEGLTLPSPGAFLV 659
Query: 342 DR-NILVIPDLYINAGGVT 395
D+ + ++P L G VT
Sbjct: 660 DQPSETIVPTLVRGGGTVT 678
>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
protein D1044.2a protein.
Length = 1051
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 168 PGAKAYEGENMLYEKC--DILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILI 341
PG Y + C I VP +++++ A R+ +K++ E G T P+ L+
Sbjct: 602 PGTWLYRIDKAQLMPCAQPIQVPPYCDRLLS--TAPRLPSKLLEEKKEGLTLPSPGAFLV 659
Query: 342 DR-NILVIPDLYINAGGVT 395
D+ + ++P L G VT
Sbjct: 660 DQPSETIVPTLVRGGGTVT 678
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 395 GDTTSVDVEVGDHENVAIDEDLVCSRCGGTVGGLR 291
G+TT ++VG E VA D L + G VGGLR
Sbjct: 2408 GETT---IDVGTDETVASDIGLTTHKFSGIVGGLR 2439
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 395 GDTTSVDVEVGDHENVAIDEDLVCSRCGGTVGGLR 291
G+TT ++VG E VA D L + G VGGLR
Sbjct: 2408 GETT---IDVGTDETVASDIGLTTHKFSGIVGGLR 2439
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 395 GDTTSVDVEVGDHENVAIDEDLVCSRCGGTVGGLR 291
G+TT ++VG E VA D L + G VGGLR
Sbjct: 2408 GETT---IDVGTDETVASDIGLTTHKFSGIVGGLR 2439
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 136 TESRTVR*SVSPALRPTKARTCFTRSATFLYPPPSNRS*TRTTLTGSKLRSLRRPPTVPP 315
T T+R + P T A T T T PPP + T TT + + TVPP
Sbjct: 179 TSPSTLRTTTKPPTTTTIATTRITTKTT-TSPPPFTTTVTTTTSAARTIATTTPIKTVPP 237
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 285 IIAEAANGPTTPAADKILID-RNILV--IPDLYINAGGVTVSFFEWLKNLNHVSYGRLTF 455
++ + A+ + K+ D +N+++ + D YI+ G + FFE + +NHV G F
Sbjct: 277 LLFDGAHANISADCSKMCHDIKNVILRELRDYYIDNGVDEMRFFETIDTVNHVEKGESKF 336
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 285 IIAEAANGPTTPAADKILID-RNILV--IPDLYINAGGVTVSFFEWLKNLNHVSYGRLTF 455
++ + A+ + K+ D +N+++ + D YI+ G + FFE + +NHV G F
Sbjct: 279 LLFDGAHANISADCSKMCHDIKNVILRELRDYYIDNGVDEMRFFETIDTVNHVEKGESKF 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,216
Number of Sequences: 27780
Number of extensions: 300434
Number of successful extensions: 861
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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