Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4056
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0207 - 1773790-1774215,1775428-1775888,1776177-1776455,177... 30 1.6
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 30 2.1
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 30 2.1
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312... 30 2.1
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 29 3.7
06_01_0602 - 4342333-4342790,4342899-4345623 29 3.7
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 29 3.7
03_05_0356 - 23421394-23421870 29 4.9
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 28 6.4
05_04_0293 - 19898254-19898819,19899698-19899701 28 8.5
02_01_0429 - 3132848-3135043 28 8.5
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 28 8.5
>01_01_0207 -
1773790-1774215,1775428-1775888,1776177-1776455,
1776601-1776724,1776811-1777020
Length = 499
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 539 ATSAALNHMLWLPYLTQLEAVANCSQSLNFLKALNSSGYNPSNYARVVADVQ 694
A + A+ H LWL V S L ++ LNS+G + S +V DV+
Sbjct: 394 AEACAIRHALWLAKEEGFHNVIVASDCLYVIQKLNSTGQDRSKIGCLVEDVK 445
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -1
Query: 315 STSGSCSTAGKANASGSCNSGLELNKFIISLPGEASIKFNLSFGINIGSGTL*SAFDL 142
ST+GSC+T G+ N+ G C + + + L + F + +GT +AF L
Sbjct: 182 STNGSCTTNGRVNSDGLCPGTACCDAYGMPLDDAQEVTFEFNKTSASVAGTCSAAFIL 239
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 527 DIDAATSAALNHMLWLPYLTQLEAVANCSQSLNFLKALNSSGYNPSNYARVVADVQ 694
D + A + A+ H LWL V L+ ++ LNS G + S +V D++
Sbjct: 774 DPETAEACAIRHALWLAKEEGFHNVIVACDCLSVIQKLNSPGRDRSKIGCLVEDIK 829
>02_01_0427 -
3124209-3124307,3124453-3125240,3125510-3125867,
3125902-3126567
Length = 636
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 208 TCLSRQRNNELIEFKAGIAAPGGIRFSCRAARPRCT 315
+C + + NN L++F AG++ GG+ S R C+
Sbjct: 19 SCCTERENNCLLQFLAGLSQDGGLAASWRLGTDCCS 54
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 611 NSWLPPLIE*DKVATACG*VQPRSRRRCPQLRH 513
N+ PP+ + T C +PR RCP RH
Sbjct: 450 NAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRH 482
>06_01_0602 - 4342333-4342790,4342899-4345623
Length = 1060
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 360 F*FSKIVSNCDNDMTSTSGSCSTAGKANASGSCNS 256
F +K+V N D D+T+ SGS + A +S CNS
Sbjct: 864 FGIAKLVKNADGDVTTNSGSIAAA----SSDPCNS 894
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 65 GEVKPKKIEWPAFNFDDDPIKQLQTLKSNADYNV 166
G +K + ++ P+F+F+DD I Q L+S DYNV
Sbjct: 25 GTLKAELLKDPSFDFNDDAI---QWLESMLDYNV 55
>03_05_0356 - 23421394-23421870
Length = 158
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 302 LAARQEKRMPPGAAIPALNSISS 234
+A ++ K+MPP AA PAL I+S
Sbjct: 103 VARKETKKMPPAAASPALADIAS 125
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 647 SGYNPSNYARVVADVQPR 700
+GY+PS Y RV+AD + R
Sbjct: 146 NGYDPSTYTRVIADYEAR 163
>05_04_0293 - 19898254-19898819,19899698-19899701
Length = 189
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 478 ADESPKADTVDGCLSWGHRRRDLGCTQPHAVATLS 582
ADE+P A D CL D+G T A A+LS
Sbjct: 144 ADETPDAVPHDMCLVLSQATNDVGRTSHRAAASLS 178
>02_01_0429 - 3132848-3135043
Length = 731
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 205 DTCLSRQRNNELIEFKAGIAAPGGIRFSCRAARPRCT 315
D+C+ ++++ L++F AG++ GG+ S R CT
Sbjct: 35 DSCIDQEKS-VLLQFLAGLSGDGGLSASWRNGTNCCT 70
>02_01_0425 -
3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 205 DTCLSRQRNNELIEFKAGIAAPGGIRFSCRAARPRCT 315
D+C+ ++++ L++F AG++ GG+ S R CT
Sbjct: 458 DSCIDQEKS-VLLQFLAGLSGDGGLSASWRNGTNCCT 493
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,981,548
Number of Sequences: 37544
Number of extensions: 358483
Number of successful extensions: 1160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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